googlegenomics / variant-annotationLinks
Use cloud technology to annotate human sequence variants in parallel.
☆11Updated 4 years ago
Alternatives and similar repositories for variant-annotation
Users that are interested in variant-annotation are comparing it to the libraries listed below
Sorting:
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Updated 8 years ago
- Data Standards Hackathon for NGS based typing.☆14Updated last month
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- GA4GH Beacon specification.☆32Updated 2 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated last month
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated 2 months ago
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- Repository for development of the genomic module of the CDM.☆23Updated 6 years ago
- SEQSpark documentation☆18Updated 4 years ago
- GCP Variant Transforms☆141Updated 4 months ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 7 months ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated this week
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆26Updated last year
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆16Updated 2 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated last week
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- An information model for representing variant annotations.☆23Updated last week
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Updated last year
- Elixir Beacon Reference Implementation. Latest release is compliant with v1.1.0 of the specification.☆14Updated 5 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Updated 7 years ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆41Updated last week
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Updated 6 years ago
- Visualization and charting JS library for streaming genomic data☆19Updated 10 months ago