kkdey / aRchaicLinks
Exploration, clustering, visualization and classification of DNA damage patterns
☆19Updated 4 years ago
Alternatives and similar repositories for aRchaic
Users that are interested in aRchaic are comparing it to the libraries listed below
Sorting:
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 4 months ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 7 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- ☆23Updated last week
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago