kkdey / aRchaicLinks
Exploration, clustering, visualization and classification of DNA damage patterns
☆19Updated 4 years ago
Alternatives and similar repositories for aRchaic
Users that are interested in aRchaic are comparing it to the libraries listed below
Sorting:
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 9 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- a set of NGS pipelines☆24Updated last week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- interactive plots for differential expression analysis☆32Updated 2 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Adapters for trimming☆30Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- ☆24Updated 5 years ago