kkdey / aRchaic

Related projects: ⓘ

• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 5 years ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 2 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆23Updated 6 months ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 10 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆21Updated 2 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 6 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆35Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• ssadedin / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.
  ☆14Updated 10 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆40Updated 2 years ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆26Updated this week
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last year
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 3 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆33Updated last year
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆27Updated last year
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆18Updated 7 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated 6 months ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 4 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆22Updated last year
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 3 months ago
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆18Updated 5 years ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 5 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated last year
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆32Updated 6 years ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 9 years ago
• kevinblighe / ClinicalGradeDNAseq
  Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…
  ☆25Updated 4 years ago
• pachterlab / kallisto-sleuth-workshop-2016
  materials and website for the 2016 kallisto sleuth workshop
  ☆11Updated 7 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆22Updated 5 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆41Updated 6 years ago