kkdey / aRchaicLinks
Exploration, clustering, visualization and classification of DNA damage patterns
☆19Updated 4 years ago
Alternatives and similar repositories for aRchaic
Users that are interested in aRchaic are comparing it to the libraries listed below
Sorting:
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- ☆13Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆35Updated 8 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- The command-line interface to GGD☆43Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year