timpalpant / java-genomics-toolkitLinks
Collection of scripts for working with Wiggle files and analyzing sequencing data
☆17Updated 6 years ago
Alternatives and similar repositories for java-genomics-toolkit
Users that are interested in java-genomics-toolkit are comparing it to the libraries listed below
Sorting:
- Next generation sequencing (NGS/HTS) tools.☆19Updated last year
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 months ago
- ☆27Updated last month
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Updated 7 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- ☆15Updated 7 months ago
- Allele frequency filter app☆14Updated 3 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- WDL tools for parsing, type-checking, and more☆27Updated 2 months ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- Efficient base quality score recalibrator for NGS data☆24Updated 10 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year