Collection of scripts for working with Wiggle files and analyzing sequencing data
☆17Feb 9, 2019Updated 7 years ago
Alternatives and similar repositories for java-genomics-toolkit
Users that are interested in java-genomics-toolkit are comparing it to the libraries listed below
Sorting:
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 9 years ago
- A simple and performant API for working with many genomic file formats in a consistent fashion☆16Mar 23, 2018Updated 7 years ago
- BigWIG, BigBED and TDF for the JVM☆13Feb 23, 2021Updated 5 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Jul 15, 2020Updated 5 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Feb 20, 2015Updated 11 years ago
- Galaxy process management and system administration tools☆14Feb 24, 2026Updated 3 weeks ago
- methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing…☆16Apr 5, 2022Updated 3 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 8 years ago
- An Example puppetized setup of grahpite, jmxtrans, collectd , logster☆58May 22, 2013Updated 12 years ago
- Dockerfiles to build Biopython instances☆28Aug 30, 2016Updated 9 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- Ansible playbooks for Galaxy Server deployment☆24Oct 14, 2025Updated 5 months ago
- ☆15Mar 7, 2016Updated 10 years ago
- Ansible Playbook for usegalaxy.org☆35Updated this week
- A configurable de novo assembly pipeline☆29Jun 29, 2016Updated 9 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆49May 27, 2025Updated 9 months ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Registration of Galaxy Tools in Elixir☆12Jan 7, 2019Updated 7 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆47Mar 18, 2022Updated 4 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Jan 21, 2021Updated 5 years ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 7 years ago
- Testing module for Galaxy workflows☆10Jul 31, 2018Updated 7 years ago
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last month
- An external library for delivering Slurm Elastic Computing.☆12Mar 31, 2017Updated 8 years ago
- FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.☆14Mar 20, 2024Updated 2 years ago
- Escape Excel: a tool for preventing gene symbol and accession conversion errors☆28Mar 12, 2025Updated last year
- ☆12Jun 18, 2022Updated 3 years ago
- An Ansible role for automated installation of tools from a Tool Shed into Galaxy.☆14Jun 17, 2024Updated last year
- Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML☆16Updated this week
- Library for managing Galaxy plugins - tools, index data, and workflows.☆32Mar 10, 2026Updated last week
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Nov 5, 2024Updated last year
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- cache packages permanently☆16Oct 9, 2025Updated 5 months ago