Alternatives and similar repositories for s3am

Users that are interested in s3am are comparing it to the libraries listed below

• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• Steven-N-Hart / VariantDB_Challenge
  Finding a scalable alternative to the VCF File for genomics analysis
  ☆14Updated 9 years ago
• mutalyzer / description-extractor
  HGVS variant description extractor
  ☆11Updated 5 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• BD2KGenomics / cgl-docker-lib
  ☆21Updated 6 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 9 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• blachlylab / mucor
  ☆12Updated 8 years ago
• JaneliaSciComp / nextflow-spark
  ☆15Updated 9 months ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 9 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆75Updated 5 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated last year
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• hammerlab / spark-bam
  Load genomic BAM files using Apache Spark
  ☆21Updated 7 years ago
• ga4gh / task-execution-server
  ☆11Updated 9 years ago
• ssadedin / groovy-ngs-utils
  A collection of utilities for working with next generation (MPS) sequencing data in Groovy
  ☆15Updated 3 weeks ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆11Updated 5 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…
  ☆31Updated 2 weeks ago
• ga4gh-beacon / beacon-elixir
  Elixir Beacon Reference Implementation. Latest release is compliant with v1.1.0 of the specification.
  ☆14Updated 5 years ago
• ga4gh / wiki
  a place for GA4GH-related wiki pages
  ☆16Updated 8 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• Illumina / Isaac3
  Aligner for sequencing data
  ☆18Updated 7 years ago
• timpalpant / java-genomics-toolkit
  Collection of scripts for working with Wiggle files and analyzing sequencing data
  ☆17Updated 6 years ago
• Illumina / gvcfgenotyper
  A utility for merging and genotyping Illumina-style GVCFs.
  ☆33Updated 6 years ago