Alternatives and similar repositories for s3am

Users that are interested in s3am are comparing it to the libraries listed below

• Steven-N-Hart / VariantDB_Challenge
  Finding a scalable alternative to the VCF File for genomics analysis
  ☆14Updated 8 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• blachlylab / mucor
  ☆12Updated 8 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 5 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• hanfang / Topsorter
  Graphical assessment of structrial variants using 10x genomics data
  ☆10Updated 8 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• raphael-group / NAIBR
  Novel Adjacency Identification with Barcoded Reads
  ☆13Updated 3 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago
• TGAC / RAMPART
  A configurable de novo assembly pipeline
  ☆28Updated 8 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 6 months ago
• johandahlberg / piper
  A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…
  ☆21Updated 8 years ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 9 years ago
• JaneliaSciComp / nextflow-spark
  ☆15Updated 2 months ago
• ekg / 1000G-integration
  variant integration methods for the 1000 Genomes Project
  ☆21Updated 7 years ago
• mutalyzer / description-extractor
  HGVS variant description extractor
  ☆11Updated 4 years ago
• DCGenomics / DangerTrack
  ☆13Updated 8 years ago
• bihealth / hlama
  Simple matching of HTS samples based on HLA typing
  ☆13Updated 8 years ago
• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 8 years ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 6 years ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 2 months ago
• WUR-AI / tomatula
  ☆15Updated 7 years ago
• ga4gh / task-execution-server
  ☆11Updated 8 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆17Updated 6 years ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 3 years ago