BD2KGenomics / s3amLinks
A fast, parallel, streaming multipart uploader for S3
☆13Updated 8 years ago
Alternatives and similar repositories for s3am
Users that are interested in s3am are comparing it to the libraries listed below
Sorting:
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- ☆12Updated 8 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- ☆11Updated 8 years ago
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 9 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Lacer: Accurate Base Quality Score Recalibration using Linear Algebra☆8Updated 3 years ago
- [Bio in Docker] Symposium 2015☆21Updated 7 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- ☆37Updated 4 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- variant integration methods for the 1000 Genomes Project☆21Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 6 years ago
- WDL tools for parsing, type-checking, and more☆25Updated 3 months ago
- A configurable de novo assembly pipeline☆28Updated 9 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago