nfergu / popstrat
Population Stratification Analysis on Genomics Data Using Deep Learning
☆26Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for popstrat
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆39Updated last week
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆69Updated last year
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆39Updated 3 weeks ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 8 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 5 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 6 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- New url: https://github.com/biointec/halvade☆19Updated 7 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆84Updated 6 years ago
- Fast and memory-efficient sequencing error corrector☆92Updated 6 months ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆15Updated 8 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 7 years ago
- Load genomic BAM files using Apache Spark☆20Updated 6 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated last year
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆45Updated 8 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Scalable RNA-seq analysis☆73Updated 3 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 8 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- Next generation sequencing (NGS/HTS) tools.☆18Updated 9 months ago