nfergu / popstrat
Population Stratification Analysis on Genomics Data Using Deep Learning
☆26Updated 8 years ago
Related projects: ⓘ
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- Benchmarking toolkit for variant calling☆47Updated 3 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 6 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆38Updated 4 months ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 8 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 7 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 5 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆69Updated last year
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆38Updated last month
- ☆15Updated this week
- ☆13Updated this week
- Seqnature: incorporate SNPs and Indels into a reference genome☆15Updated 8 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 6 years ago
- ☆24Updated this week
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 8 years ago
- New url: https://github.com/biointec/halvade☆19Updated 7 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 8 years ago
- Fast and memory-efficient sequencing error corrector☆92Updated 4 months ago
- [Bio in Docker] Symposium 2015☆21Updated 6 years ago
- Toil workflows for common genomic pipelines☆32Updated 4 years ago
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Updated 6 years ago
- ☆45Updated 8 years ago
- Load genomic BAM files using Apache Spark☆20Updated 6 years ago
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Updated 7 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 8 years ago
- ☆12Updated 2 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- A scalable genome browser. Apache 2 licensed.☆124Updated last year