Alternatives and similar repositories for Reseqtools

Users that are interested in Reseqtools are comparing it to the libraries listed below

• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆97Updated 3 months ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 4 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆95Updated last week
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆90Updated last year
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆67Updated 4 years ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆35Updated 7 years ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆98Updated 3 years ago
• JinfengChen / Scripts
  ☆74Updated 5 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆114Updated 10 months ago
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆71Updated 3 years ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆37Updated 4 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆116Updated 9 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• irusri / Extract-intron-from-gff3
  This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
  ☆33Updated 6 years ago
• YuSugihara / MutMap
  MutMap pipeline to identify causative mutations responsible for a phenotype
  ☆54Updated 6 months ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆109Updated 3 years ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆178Updated 10 months ago
• xiaochuanle / MECAT
  MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
  ☆109Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆71Updated 2 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆90Updated last month
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆157Updated 5 months ago
• bmansfeld / QTLseqr
  QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
  ☆80Updated 5 years ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆116Updated last month
• arzwa / wgd
  Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…
  ☆85Updated last year
• chenlianfu / geta
  ☆82Updated last year
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 2 months ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆131Updated last month