cuelee / pleio
☆18Updated last year
Alternatives and similar repositories for pleio:
Users that are interested in pleio are comparing it to the libraries listed below
- This is a pipeline for calculating weights for TWAS☆30Updated 2 years ago
- An R package for creating ggplot2 based miami plots.☆16Updated 11 months ago
- A collection of various utilities for GWAS summary statistics☆27Updated 9 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 6 years ago
- R script to make Manhattan-style plot for TWAS☆37Updated 3 years ago
- Regional association plots☆25Updated 11 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- Pleiotropy-informed conditional and conjunctional false discovery rate☆27Updated last year
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- Partners Biobank genomics data QC☆25Updated 4 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆31Updated 5 months ago
- GWAS genetics Fine-mapping method☆21Updated 4 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆15Updated 3 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆21Updated this week
- ☆32Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 10 months ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 4 months ago
- Integration of TWAS and Colocalization Analysis☆15Updated 4 months ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆14Updated 2 weeks ago
- ☆25Updated 3 years ago
- ☆21Updated 3 months ago
- ☆34Updated 4 years ago
- Scripts to run mQTL analyses as described in the ARIES mQTL paper☆9Updated 8 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 2 years ago
- Estimate genetic correlation using predicted expression☆21Updated 6 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- A powerful TWAS framework leveraging summary-level reference data☆27Updated last month