cuelee / pleio
☆17Updated 6 months ago
Related projects: ⓘ
- R script to make Manhattan-style plot for TWAS☆35Updated 3 years ago
- This is a pipeline for calculating weights for TWAS☆26Updated 2 years ago
- An R package for creating ggplot2 based miami plots.☆15Updated 6 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆30Updated last week
- Regional association plots☆25Updated 5 months ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆24Updated 9 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆11Updated 11 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆39Updated 6 years ago
- ☆32Updated last year
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- An R package for creating mirrored Manhattan plots☆17Updated last year
- corrplot of LDSC genetic correlation results☆44Updated 2 years ago
- ☆19Updated 4 months ago
- Partners Biobank genomics data QC☆23Updated 4 years ago
- ☆20Updated 4 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆27Updated 3 weeks ago
- A collection of various utilities for GWAS summary statistics☆26Updated 4 months ago
- Manhattan++☆24Updated 7 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆43Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆29Updated 5 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆24Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆37Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆18Updated 8 months ago
- ☆32Updated 3 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 2 weeks ago
- Statistical fine-mapping pipeline in FinnGen☆24Updated last week
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Primo☆16Updated 3 years ago
- ☆24Updated 2 years ago