cuelee / pleioLinks
☆19Updated last year
Alternatives and similar repositories for pleio
Users that are interested in pleio are comparing it to the libraries listed below
Sorting:
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- R script to make Manhattan-style plot for TWAS☆38Updated 3 years ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- Regional association plots☆25Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 4 months ago
- ☆34Updated 2 years ago
- An R package for creating ggplot2 based miami plots.☆17Updated 5 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated 11 months ago
- Colocalization analysis of genetic association signals☆52Updated last month
- A collection of various utilities for GWAS summary statistics☆29Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆27Updated 2 weeks ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 10 months ago
- S-LDSC scripts for use on MR server.☆10Updated 3 years ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last month
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆19Updated 2 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆34Updated last month
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 4 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated 9 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 6 months ago
- ☆28Updated 3 years ago
- ☆57Updated 6 months ago
- Software for estimating correlation of trait effect sizes across populations☆47Updated 2 months ago
- corrplot of LDSC genetic correlation results☆52Updated 3 years ago
- ☆23Updated 2 weeks ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆30Updated last year
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆27Updated last week
- MR-link-2: pleiotropy robust cis MR☆18Updated last week