Alternatives and similar repositories for MRcovid:

Users that are interested in MRcovid are comparing it to the libraries listed below

• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆15Updated 3 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆22Updated last week
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 11 months ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 2 weeks ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆14Updated this week
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆22Updated 5 months ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 11 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 5 months ago
• cuelee / pleio
  ☆18Updated last year
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆31Updated 3 weeks ago
• LizaDarrous / PheWAS-cluster
  ☆19Updated 7 months ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago
• globalbiobankmeta / multi-ancestry-pwmr
  Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
  ☆18Updated last year
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆14Updated 3 months ago
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• satoshi-yoshiji / TwoStepMR_Obesity_COVID
  Codes for our NPNT paper at Nature Metabolism
  ☆15Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆26Updated 10 months ago
• precimed / gsa-mixer
  ☆14Updated 3 weeks ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆28Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 6 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• adriaan-vd-graaf / mrlink2
  MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.
  ☆13Updated 2 weeks ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 7 months ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆15Updated 4 months ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 8 months ago