xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format
☆14Aug 5, 2025Updated last year
Alternatives and similar repositories for xSqueezeIt
Users that are interested in xSqueezeIt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 13, 2020Updated 6 years ago
- ☆11Feb 14, 2023Updated 3 years ago
- Convert bioinformatics file formats to Zarr☆47Oct 2, 2026Updated last week
- ☆23Aug 28, 2026Updated last month
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆12Sep 15, 2026Updated 3 weeks ago
- ☆11Aug 18, 2026Updated last month
- Python module to read binary Plink files.☆18Mar 25, 2026Updated 6 months ago
- kmer-counter based on kache-hash☆19Updated this week
- ☆19Apr 14, 2024Updated 2 years ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated 2 years ago
- ☆35Jun 20, 2025Updated last year
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 3 years ago
- A pipeline creation tool using Snakemake☆14Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Infer a tree sequence from genetic variation data.☆65Sep 8, 2026Updated last month
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆60Oct 29, 2023Updated 2 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Aug 12, 2026Updated last month
- bcftools-compatible querying and format conversion for VCF Zarr☆28Jun 8, 2026Updated 4 months ago
- A Firefox add-on that warns about changing certificates☆12Dec 1, 2019Updated 6 years ago
- ☆12Sep 30, 2026Updated last week
- EM-PCA for Ultra-low Coverage Sequencing Data☆20Dec 18, 2025Updated 9 months ago
- Workbench demo project: cross-analysis of AoU and UKB.☆16May 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Jul 24, 2026Updated 2 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Scripts for implementing the Tractor pipeline☆56Jul 29, 2026Updated 2 months ago
- R Package for Hierarchical Regularized Regression to Incorporate External Data☆10Dec 17, 2025Updated 9 months ago
- 📖 Jekyll plugin for displaying reading time duration.☆12Nov 21, 2023Updated 2 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆21Jun 11, 2024Updated 2 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 6 years ago
- ☆13Jan 31, 2015Updated 11 years ago
- OpenMendel package for haplotyping and imputation☆26Oct 8, 2025Updated last year
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 13 years ago
- Lecture notes, projects, and more resources on the courses I attended for my Bachelor's and Master's degrees in Computer Science☆23Jan 25, 2022Updated 4 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆58Jun 11, 2024Updated 2 years ago
- ☆39Jul 4, 2021Updated 5 years ago