xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format
☆14Aug 5, 2025Updated 7 months ago
Alternatives and similar repositories for xSqueezeIt
Users that are interested in xSqueezeIt are comparing it to the libraries listed below
Sorting:
- ☆10Jun 13, 2020Updated 5 years ago
- ☆11Feb 14, 2023Updated 3 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- ☆11Nov 21, 2025Updated 3 months ago
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated 11 months ago
- ☆19Apr 14, 2024Updated last year
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Dec 18, 2025Updated 2 months ago
- Python module to read binary Plink files.☆17Jun 18, 2024Updated last year
- IBD based kinship estimation☆16Mar 3, 2023Updated 3 years ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 2 weeks ago
- As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-…☆44May 7, 2020Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- An open source genomics data analysis package based on deep learning for auto tuning network structure and building models.☆21Oct 3, 2023Updated 2 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆21Jan 25, 2023Updated 3 years ago
- ☆17Mar 21, 2023Updated 2 years ago
- A set of tutorials for msprime and tskit.☆21Mar 2, 2026Updated last week
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆54Jun 11, 2024Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Dec 19, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆20Jun 11, 2024Updated last year
- ☆22Updated this week
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆20May 10, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Scripts for implementing the Tractor pipeline☆54Sep 4, 2025Updated 6 months ago
- Improving gene isoform quantification with miniQuant☆35Jan 13, 2026Updated last month
- Infer the age of ancestral nodes in a tree sequence.☆25Updated this week
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Interface to various variant calling formats.☆31Jun 15, 2024Updated last year
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆25Feb 20, 2026Updated 2 weeks ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- ☆27Updated this week
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 2 years ago
- ☆29Jul 10, 2019Updated 6 years ago
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 5 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- Infer a tree sequence from genetic variation data.☆60Mar 2, 2026Updated last week
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Oct 29, 2023Updated 2 years ago