Alternatives and similar repositories for xSqueezeIt

Users that are interested in xSqueezeIt are comparing it to the libraries listed below

• YingZhou001 / IBDkin
  IBD based kinship estimation
  ☆16Updated 2 years ago
• statgen / topmed_variant_calling
  ☆24Updated 11 months ago
• yukt / MetaMinimac2
  ☆11Updated 2 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆18Updated 8 years ago
• tkzeng / GeneBayes
  ☆29Updated 5 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆69Updated 2 months ago
• hoffmangroup / umap
  ☆30Updated 4 months ago
• gymrek-lab / EnsembleTR
  Tools for merging Tandem Repeat VCF files
  ☆37Updated 6 months ago
• daviddaiweizhang / fraposa
  ☆16Updated 2 years ago
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆14Updated 7 years ago
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated last month
• SexChrLab / XYalign
  ☆29Updated 6 years ago
• heatherjzhou / PCAForQTL
  PCA for hidden variable inference in QTL mapping: an R package and tutorial
  ☆19Updated 2 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆28Updated last year
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 3 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆34Updated last month
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 8 months ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆34Updated 3 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• elzbth / jitterbug
  Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…
  ☆17Updated 8 years ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 11 months ago
• mritchielab / restrander
  ☆11Updated 6 months ago
• zd1 / telseq
  A software for calculating telomere length
  ☆72Updated 7 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• sriramlab / SCOPE
  Scalable population structure inference
  ☆18Updated 3 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 11 months ago
• fakedrtom / SVAFotate
  ☆44Updated last year
• broadinstitute / str-analysis
  Scripts and utilities related to analyzing tandem repeats (TRs).
  ☆41Updated this week