xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format
☆14Aug 5, 2025Updated 8 months ago
Alternatives and similar repositories for xSqueezeIt
Users that are interested in xSqueezeIt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 13, 2020Updated 5 years ago
- Partial reimplementation of bcftools for VCF Zarr☆23Updated this week
- Convert bioinformatics file formats to Zarr☆45Updated this week
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated last year
- ☆11Feb 14, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆22Apr 12, 2026Updated last week
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated last month
- ☆19Apr 14, 2024Updated 2 years ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated last year
- ☆11Nov 21, 2025Updated 4 months ago
- ☆32Jun 20, 2025Updated 9 months ago
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 12 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline creation tool using Snakemake☆13Updated this week
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Oct 29, 2023Updated 2 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 6 months ago
- Infer a tree sequence from genetic variation data.☆63Apr 1, 2026Updated 2 weeks ago
- Workbench demo project: cross-analysis of AoU and UKB.☆15May 2, 2023Updated 2 years ago
- As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-…☆43May 7, 2020Updated 5 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 5 months ago
- Extract Outlook email messages and attachments from MSG files.☆17Feb 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 11 months ago
- A Firefox add-on that warns about changing certificates☆12Dec 1, 2019Updated 6 years ago
- Improving gene isoform quantification with miniQuant☆41Jan 13, 2026Updated 3 months ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Apr 8, 2026Updated last week
- Genotype Representation Graph Library☆44Apr 1, 2026Updated 2 weeks ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Feb 10, 2026Updated 2 months ago
- Scripts for implementing the Tractor pipeline☆55Sep 4, 2025Updated 7 months ago
- 📖 Jekyll plugin for displaying reading time duration.☆12Nov 21, 2023Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆20Jun 11, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Lecture notes, projects, and more resources on the courses I attended for my Bachelor's and Master's degrees in Computer Science☆24Jan 25, 2022Updated 4 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆22Jan 25, 2023Updated 3 years ago
- ☆14Oct 17, 2024Updated last year
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Dec 18, 2025Updated 4 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago