Alternatives and similar repositories for SRAgent

Users that are interested in SRAgent are comparing it to the libraries listed below

• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆62Updated this week
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 4 months ago
• czi-ai / transcriptformer
  ☆86Updated last month
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆52Updated 4 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆86Updated last week
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆77Updated 2 weeks ago
• DanHanh / scLinear
  ☆19Updated last year
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆108Updated this week
• Illumina / PromoterAI
  ☆78Updated 3 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆96Updated 7 months ago
• idekerlab / llm_evaluation_for_gene_set_interpretation
  Code space for 'Evaluation of large language models for discovery of gene set function'
  ☆39Updated 9 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆123Updated 3 weeks ago
• zou-group / CellVoyager
  ☆91Updated 3 weeks ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆68Updated 2 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• calico / baskerville
  Machine learning methods for DNA sequence analysis.
  ☆55Updated last month
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆109Updated last week
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• CompEpigen / methylbert
  A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
  ☆37Updated 6 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆47Updated this week
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆80Updated last year
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆105Updated 2 years ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆70Updated 10 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆23Updated last year
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆100Updated 3 months ago
• ai4nucleome / BioMaster
  ☆69Updated 4 months ago
• theislab / vevo_Tahoe_100m_analysis
  ☆30Updated 5 months ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆95Updated 6 years ago