LLM agents for working with the SRA and associated bioinformatics databases.
☆181Jul 24, 2026Updated last month
Alternatives and similar repositories for SRAgent
Users that are interested in SRAgent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆36Jul 24, 2026Updated last month
- Arc Virtual Cell Atlas☆587Aug 28, 2026Updated last week
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆125Jul 6, 2025Updated last year
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆671Jul 24, 2026Updated last month
- Single-cell perturbation effects prediction benchmark☆103May 6, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- ☆159Nov 6, 2025Updated 10 months ago
- An efficient CLI to extract sequences from the SRA☆128Jun 12, 2026Updated 2 months ago
- A harness for spatial biology☆207May 4, 2026Updated 4 months ago
- parallel differential expression for single-cell perturbation sequencing☆30Aug 26, 2026Updated last week
- Visualize 3D ST data in Jupyter☆24Aug 21, 2026Updated 2 weeks ago
- Comprehensive suite for evaluating perturbation prediction models☆156Jul 27, 2026Updated last month
- ☆13Aug 25, 2026Updated last week
- This is the alpha version of the CellOracle package☆491Apr 30, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆259Mar 14, 2026Updated 5 months ago
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆109Feb 10, 2026Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated last month
- Modeling complex perturbations with CellFlow☆159Aug 31, 2026Updated last week
- UCE is a zero-shot foundation model for single-cell gene expression data☆335Jul 8, 2026Updated last month
- AnnData interoperability in R☆195Aug 31, 2026Updated last week
- CZ CELLxGENE Discover Census☆128Aug 4, 2026Updated last month
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated 3 weeks ago
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆111Mar 16, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- Benchmarking analysis of data integration tools☆429Apr 27, 2026Updated 4 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆47May 27, 2026Updated 3 months ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆159Apr 28, 2026Updated 4 months ago
- ☆111Updated this week
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 3 months ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 6 months ago
- ☆32Jul 27, 2026Updated last month
- ☆563Aug 30, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆1,622Apr 29, 2026Updated 4 months ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆16Feb 23, 2026Updated 6 months ago
- ☆53Sep 23, 2025Updated 11 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆93Aug 21, 2026Updated 2 weeks ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆101Aug 31, 2026Updated last week