ArcInstitute / SRAgentLinks
LLM agents for working with the SRA and associated bioinformatics databases.
☆116Updated last month
Alternatives and similar repositories for SRAgent
Users that are interested in SRAgent are comparing it to the libraries listed below
Sorting:
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆60Updated 10 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 3 months ago
- ☆73Updated this week
- ☆19Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 3 months ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- The code for gene set analysis by accessing domain databases☆60Updated 3 weeks ago
- ☆84Updated 2 weeks ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- single cell foundation model☆100Updated this week
- What you need to process the Quarterly DepMap-Omics releases from Terra☆120Updated 2 weeks ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 5 months ago
- CpGPT: a Foundation Model for DNA Methylation.☆50Updated this week
- ☆66Updated 3 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆93Updated last month
- Multi-modal single cell analysis pipelines☆59Updated last month
- Code space for 'Evaluation of large language models for discovery of gene set function'☆36Updated 8 months ago
- Code and documentation for the curation of cellxgene datasets☆49Updated this week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆46Updated this week
- CZ CELLxGENE Discover Census☆109Updated this week
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated 2 years ago
- ☆55Updated 3 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆57Updated 3 weeks ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- metadata and data from the database☆41Updated 5 years ago
- ☆72Updated 2 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆44Updated last week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated last month
- A continually expanding collection of cancer genomics notes and data☆107Updated last month
- Machine learning methods for DNA sequence analysis.☆53Updated this week