ArcInstitute / SRAgentLinks
LLM agents for working with the SRA and associated bioinformatics databases.
☆142Updated 2 months ago
Alternatives and similar repositories for SRAgent
Users that are interested in SRAgent are comparing it to the libraries listed below
Sorting:
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆181Updated last month
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 8 months ago
- ☆98Updated 2 months ago
- The code for gene set analysis by accessing domain databases☆94Updated 3 weeks ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆98Updated 2 months ago
- ☆100Updated 4 months ago
- 🏃 The go-to single-cell Foundation Model☆129Updated last month
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆60Updated 3 weeks ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆58Updated 8 months ago
- CZ CELLxGENE Discover Census☆114Updated last week
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- Multi-modal single cell analysis pipelines☆62Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 10 months ago
- Code space for 'Evaluation of large language models for discovery of gene set function'☆42Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- ☆72Updated last week
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- ☆87Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated last week
- CpGPT: a Foundation Model for DNA Methylation.☆64Updated 3 weeks ago
- ☆134Updated 9 months ago
- Universal Single-Cell Genomics Preprocessing package☆48Updated this week
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆152Updated last year