A harness for spatial biology
☆200May 4, 2026Updated 3 months ago
Alternatives and similar repositories for SpatialAgent
Users that are interested in SpatialAgent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data☆61May 22, 2026Updated 2 months ago
- MCP server for spatial transcriptomics analysis through natural language interfaces.☆43Updated this week
- ☆143Feb 13, 2025Updated last year
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Aug 3, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆258Mar 14, 2026Updated 4 months ago
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 4 months ago
- Generate a spatial catalogue from multiplexed imaging data☆19Jun 12, 2025Updated last year
- Benchmark agents on BioML tasks☆74Sep 14, 2025Updated 10 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆182Updated this week
- Biomni: a general-purpose biomedical AI agent☆3,670Aug 3, 2026Updated last week
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆109Feb 10, 2026Updated 6 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Aug 3, 2026Updated last week
- STELLA: Self-Evolving LLM Agent for Biomedical Research☆148Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LLM agents for working with the SRA and associated bioinformatics databases.☆177Jul 24, 2026Updated 2 weeks ago
- ☆67Jul 2, 2026Updated last month
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆170Nov 23, 2025Updated 8 months ago
- ☆18May 15, 2026Updated 2 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Aug 3, 2026Updated last week
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated 3 weeks ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- ☆252Jun 2, 2026Updated 2 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆390Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆872Nov 4, 2025Updated 9 months ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 4 months ago
- Arc Virtual Cell Atlas☆570Jul 1, 2026Updated last month
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆17Jul 6, 2026Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆185Jul 26, 2026Updated 2 weeks ago
- Modeling complex perturbations with CellFlow☆153Aug 3, 2026Updated last week
- Accessible and interoperable whole slide image analysis☆315Jul 28, 2026Updated last week
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆51Jun 5, 2025Updated last year
- ☆31Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation☆14Jul 15, 2024Updated 2 years ago
- ☆72Jan 18, 2023Updated 3 years ago
- ☆38Jul 31, 2026Updated last week
- Benchmark for evaluating LLM agents in bioinformatics