czi-ai / transcriptformerLinks
☆58Updated last week
Alternatives and similar repositories for transcriptformer
Users that are interested in transcriptformer are comparing it to the libraries listed below
Sorting:
- single cell foundation model for Gene network inference and more☆96Updated this week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆42Updated last week
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆58Updated 9 months ago
- ☆35Updated 3 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆49Updated 6 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 8 months ago
- ☆59Updated 10 months ago
- CZ CELLxGENE Discover Census☆105Updated this week
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- Multi-modal single cell analysis pipelines☆59Updated 2 weeks ago
- ☆32Updated 2 months ago
- Code and documentation for the curation of cellxgene datasets☆47Updated this week
- a dataloader to work with large single cell datasets from lamindb☆29Updated last month
- Flow & mass cytometry analytics.☆53Updated last week
- ☆26Updated 2 months ago
- Unified knowledge-driven network inference from omics data☆65Updated last week
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆55Updated 2 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆46Updated last week
- ☆80Updated 11 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 5 months ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆70Updated 2 years ago
- ☆132Updated last year
- Modeling complex perturbations with CellFlow☆74Updated this week
- Multimodal Data (.h5mu) implementation for Python☆99Updated 2 months ago
- ☆36Updated 2 months ago
- ☆55Updated 2 months ago
- Vector representations of gene co-expression in single cell RNAseq.☆36Updated 2 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆23Updated 11 months ago