czi-ai / transcriptformerLinks
☆51Updated last week
Alternatives and similar repositories for transcriptformer
Users that are interested in transcriptformer are comparing it to the libraries listed below
Sorting:
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated this week
- ☆34Updated last month
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆58Updated 8 months ago
- Multi-modal single cell analysis pipelines☆59Updated 2 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- Flow & mass cytometry analytics.☆52Updated 2 weeks ago
- single cell foundation model for Gene network inference and more☆88Updated this week
- ☆59Updated 9 months ago
- a dataloader to work with large single cell datasets from lamindb☆26Updated this week
- CZ CELLxGENE Discover Census☆103Updated this week
- Modeling complex perturbations with CellFlow☆57Updated this week
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆44Updated this week
- ☆23Updated 10 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆55Updated last month
- ☆43Updated 7 months ago
- Code and documentation for the curation of cellxgene datasets☆46Updated this week
- ☆19Updated 11 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated last month
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆36Updated last month
- bioinformatics plotting and tools☆59Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated this week
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 weeks ago
- ☆28Updated last month
- ☆26Updated last week
- ☆25Updated last month
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆32Updated 2 months ago