☆134Nov 6, 2025Updated 6 months ago
Alternatives and similar repositories for transcriptformer
Users that are interested in transcriptformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Jan 22, 2025Updated last year
- Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers☆138Nov 24, 2025Updated 5 months ago
- ☆27May 14, 2026Updated last week
- ☆17Nov 12, 2025Updated 6 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆164Nov 23, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆65Sep 13, 2024Updated last year
- UCE is a zero-shot foundation model for single-cell gene expression data☆255Feb 26, 2026Updated 2 months ago
- single-cell latent diffusion model☆51May 11, 2026Updated last week
- ☆17Nov 8, 2024Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆118Dec 10, 2025Updated 5 months ago
- Codebase for training the SubCell models☆20Updated this week
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆860Nov 4, 2025Updated 6 months ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 5 months ago
- Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).☆28Nov 22, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆29Aug 29, 2025Updated 8 months ago
- a dataloader to work with large single cell datasets from lamindb☆40Updated this week
- ☆14Nov 29, 2025Updated 5 months ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Apr 28, 2026Updated 3 weeks ago
- ☆15Aug 17, 2023Updated 2 years ago
- Arc Virtual Cell Atlas☆522Feb 12, 2026Updated 3 months ago
- ☆35Updated this week
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆17Oct 5, 2024Updated last year
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆449Jan 21, 2026Updated 4 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆49May 14, 2025Updated last year
- ☆18Nov 7, 2025Updated 6 months ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14May 4, 2026Updated 2 weeks ago
- ☆62Apr 5, 2024Updated 2 years ago
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆37Dec 18, 2025Updated 5 months ago
- ☆20Apr 30, 2025Updated last year
- ☆96Apr 3, 2026Updated last month
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆36May 15, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆37Feb 20, 2026Updated 3 months ago
- Open-source data lakehouse for biology. Context and memory for datasets and models at scale, across infrastructure. Query, trace & valida…☆264Updated this week
- LLM agents for working with the SRA and associated bioinformatics databases.☆168Nov 13, 2025Updated 6 months ago
- 🏃 The go-to single-cell Foundation Model☆148Updated this week
- ☆26Dec 19, 2025Updated 5 months ago
- material for the "Introduction to Statistics with Python" SIB-training course☆17Jun 6, 2025Updated 11 months ago
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆23May 15, 2026Updated last week