czi-ai / transcriptformerLinks
☆52Updated 2 weeks ago
Alternatives and similar repositories for transcriptformer
Users that are interested in transcriptformer are comparing it to the libraries listed below
Sorting:
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆58Updated 8 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆40Updated this week
- single cell foundation model for Gene network inference and more☆90Updated last week
- ☆34Updated 2 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 5 months ago
- CZ CELLxGENE Discover Census☆104Updated this week
- Modeling complex perturbations with CellFlow☆64Updated this week
- ☆28Updated last month
- ☆59Updated 10 months ago
- Multi-modal single cell analysis pipelines☆59Updated last week
- Code and documentation for the curation of cellxgene datasets☆47Updated this week
- ☆25Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆44Updated this week
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Flow & mass cytometry analytics.☆53Updated this week
- Computational Optimization of DNA Activity (CODA)☆60Updated 3 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 4 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆49Updated last month
- a dataloader to work with large single cell datasets from lamindb☆27Updated last week
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 3 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆54Updated last month
- ☆131Updated last year
- ☆80Updated 11 months ago
- ☆23Updated 10 months ago
- ☆25Updated 2 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 3 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆54Updated this week