czi-ai / transcriptformer
☆25Updated this week
Alternatives and similar repositories for transcriptformer:
Users that are interested in transcriptformer are comparing it to the libraries listed below
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆18Updated last month
- ☆25Updated 3 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆50Updated last month
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆35Updated last week
- ☆30Updated this week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆56Updated last month
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆14Updated 6 months ago
- ☆19Updated 9 months ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- Functional Embedding of Gene Signatures☆43Updated last year
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last month
- Python package to load and query ARCHS4 data☆21Updated last month
- Dataloader for applying sequence models to personalized genomics☆25Updated this week
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆35Updated this week
- Diffusion model for gene regulatory network inference.☆18Updated last month
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆41Updated 5 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated 11 months ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- ☆58Updated 7 months ago
- ☆24Updated 3 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆65Updated last month
- ☆16Updated 10 months ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆48Updated last week
- ☆34Updated this week