czi-ai / transcriptformerLinks
☆46Updated this week
Alternatives and similar repositories for transcriptformer
Users that are interested in transcriptformer are comparing it to the libraries listed below
Sorting:
- ☆32Updated 3 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆37Updated last month
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 6 months ago
- Modeling complex perturbations with CellFlow☆44Updated this week
- Flow & mass cytometry analytics.☆48Updated this week
- Multi-modal single cell analysis pipelines☆57Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆43Updated this week
- CZ CELLxGENE Discover Census☆100Updated this week
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated 2 weeks ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- Computational Optimization of DNA Activity (CODA)☆59Updated last month
- ☆25Updated last week
- ☆58Updated 8 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆55Updated 7 months ago
- Code and documentation for the curation of cellxgene datasets☆44Updated this week
- ☆26Updated last week
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆31Updated 2 months ago
- a dataloader to work with large single cell datasets from lamindb☆26Updated this week
- single cell foundation model for Gene network inference and more☆81Updated this week
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆53Updated last week
- ☆23Updated 9 months ago
- Knowledge-primed neural networks☆37Updated 2 years ago
- ☆19Updated 10 months ago
- Dataloader for applying sequence models to personalized genomics☆26Updated this week
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 2 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Notebooks used in scvi-tools tutorials☆52Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆55Updated last week
- ☆78Updated 9 months ago