Alternatives and similar repositories for DeepProZyme

Users that are interested in DeepProZyme are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• Merck / bgc-pipeline
  ☆12Updated 10 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 7 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 2 weeks ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆12Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated 2 years ago
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• tlawrence3 / amPEPpy
  ☆29Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆56Updated 10 months ago
• cansyl / ECPred
  ☆17Updated 3 years ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆55Updated 5 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆24Updated 4 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆60Updated 5 years ago
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆17Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated last month
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• TattaBio / OMG
  ☆46Updated last year
• TattaBio / gLM2
  ☆70Updated last year
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• Rcoppee / CONSTRUCT
  Finding patch of conserved amino acid sites in 3D structure
  ☆12Updated 6 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week