kaistsystemsbiology / DeepProZymeLinks
DeepECtransformer
☆26Updated last year
Alternatives and similar repositories for DeepProZyme
Users that are interested in DeepProZyme are comparing it to the libraries listed below
Sorting:
- Fast protein domain structure embedding+search tool☆25Updated 2 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Python framework for doing ancestral sequence reconstruction☆39Updated last year
- Code for LazyAF pipeline☆20Updated last year
- Virus Protein Structural Analysis Toolkit☆11Updated 10 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated last year
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated last month
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- Next generation sequence parameter library for proteins☆34Updated 2 weeks ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- ☆22Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- Long disorder consensus predictor☆16Updated 5 months ago
- Evolutionary conservation estimation of residues or nucleotides☆46Updated 3 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- ☆70Updated 9 months ago
- ☆11Updated 7 months ago
- ☆30Updated last year
- ☆43Updated 11 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- Genomic language model predicts protein co-regulation and function☆82Updated 4 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 7 months ago
- ☆43Updated 10 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 6 months ago
- ☆17Updated 3 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆38Updated last week
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆53Updated 3 months ago