Alternatives and similar repositories for DeepProZyme

Users that are interested in DeepProZyme are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆25Updated 2 weeks ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 3 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆61Updated 5 years ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆12Updated last year
• Merck / bgc-pipeline
  ☆11Updated 9 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 6 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆24Updated 4 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆55Updated 5 months ago
• clairemcwhite / vcmsa
  ☆30Updated last year
• TattaBio / gLM2
  ☆70Updated 11 months ago
• cansyl / ECPred
  ☆17Updated 3 years ago
• teevee112 / DeepLoc-2.0
  Multi-label subcellular localization and sorting signal prediction based on protein foundation models
  ☆20Updated last year
• tlawrence3 / amPEPpy
  ☆28Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆17Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated 2 months ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 5 months ago
• jbloomlab / SARS2-mut-fitness
  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
  ☆21Updated 10 months ago