Alternatives and similar repositories for batch-effects-normalization:

Users that are interested in batch-effects-normalization are comparing it to the libraries listed below

• gevaertlab / metalearning_survival
  ☆15Updated 3 years ago
• uhlerlab / cross-modal-autoencoders
  ☆54Updated 2 years ago
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆75Updated this week
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆47Updated 2 months ago
• crosszamirski / WS-DINO
  WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…
  ☆20Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆78Updated 3 weeks ago
• zhangxiaoyu11 / OmiVAE
  End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.
  ☆31Updated 3 years ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆10Updated 3 weeks ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆58Updated 3 weeks ago
• Boom5426 / Awesome-Phenotypic-Drug-Discovery
  PDD: Awesome Phenotypic Drug Discovery
  ☆21Updated 2 weeks ago
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆163Updated 2 weeks ago
• HakimBenkirane / CustOmics
  A deep-learning framework for multi-omics integration
  ☆24Updated last year
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆67Updated last year
• jmhb0 / o2vae
  O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data
  ☆29Updated 8 months ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆17Updated this week
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆77Updated 10 months ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆47Updated 6 months ago
• CaicedoLab / 2023_Moshkov_NatComm
  Predicting assays Using Morphological Analysis
  ☆13Updated 8 months ago
• HanwenXuTHU / BioTranslatorProject
  ☆33Updated last year
• biocompibens / phenexplain
  Phenexplain source code
  ☆12Updated last year
• idekerlab / TCRP
  Few shot learning for cancer
  ☆35Updated 3 years ago
• theislab / IMPA
  ☆10Updated 3 weeks ago
• jsxlei / scCLIP
  ☆27Updated 11 months ago
• ys-zong / conST
  conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
  ☆26Updated 11 months ago
• rampasek / DrVAE
  Drug Response Variational Autoencoder
  ☆28Updated 5 years ago
• snap-stanford / stellar
  ☆64Updated 2 years ago
• AgatheSenellart / MultiVae
  Unifying Multimodal Variational Autoencoders (VAEs) in Pytorch
  ☆29Updated this week
• bunnech / condot
  Supervised Training of Conditional Monge Maps
  ☆14Updated last year
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆20Updated 3 weeks ago
• txWang / MOGONET
  MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…
  ☆150Updated 3 years ago