Alternatives and similar repositories for llm_evaluation_for_gene_set_interpretation

Users that are interested in llm_evaluation_for_gene_set_interpretation are comparing it to the libraries listed below

• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated last month
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 8 months ago
• jshilts / shilts-et-al-2022-immunoreceptors
  Supporting data files and code for the publication by Shilts et al.
  ☆31Updated 3 years ago
• lanagarmire / Single-cell-drug-repositioning
  ☆17Updated last year
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆65Updated 5 years ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆82Updated last month
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆57Updated last year
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆43Updated last year
• ailabstw / scDrug
  scDrug: From scRNA-seq to Drug Repositioning
  ☆36Updated 2 years ago
• oscar-franzen / PanglaoDB
  metadata and data from the database
  ☆41Updated 5 years ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆33Updated 3 weeks ago
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• suinleelab / contrastiveVI
  ☆57Updated last year
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated last year
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• MedicalGenomicsLab / deconvolution_benchmarking
  ☆21Updated last year
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 6 months ago
• datapplab / AutoClass
  ☆44Updated 3 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• Enjewl / ICARUS
  Interactive single cell RNA-seq analysis webserver!
  ☆10Updated 2 years ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated last week
• SpielmannLab / STIGMA
  ☆10Updated 3 weeks ago
• jlakkis / sciPENN
  ☆18Updated 3 years ago