Alternatives and similar repositories for IKAP:

Users that are interested in IKAP are comparing it to the libraries listed below

• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆44Updated 3 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆71Updated 4 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆54Updated last month
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆54Updated 3 months ago
• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆20Updated 2 years ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆31Updated 11 months ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆43Updated 3 months ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆19Updated 2 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆36Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• califano-lab / single-cell-pipeline
  ☆44Updated 5 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆31Updated last year
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• lhe17 / nebula
  ☆35Updated 11 months ago
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆44Updated 2 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 2 months ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated 2 years ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆26Updated 7 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆30Updated 2 months ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆33Updated last year
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆20Updated 10 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆72Updated 5 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆34Updated 3 years ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆26Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆36Updated 2 years ago