GenomicsNX / IKAPLinks
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
☆18Updated 5 years ago
Alternatives and similar repositories for IKAP
Users that are interested in IKAP are comparing it to the libraries listed below
Sorting:
- Various utility functions for Seurat single-cell analysis☆51Updated 7 months ago
- Cell type pipes for R☆51Updated last year
- R package for semi-supervised single-cell data integration☆84Updated 2 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated 11 months ago
- Toolkit for Single-Cell Velocity☆58Updated last week
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 7 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆82Updated 2 years ago
- ☆41Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 weeks ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆17Updated last month
- ☆19Updated 3 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆62Updated 8 months ago
- ☆62Updated 5 years ago
- ☆41Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Latent Embedding Multivariate Regression☆92Updated 7 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Methods for decontamination of single cell data☆47Updated 5 months ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Updated 4 years ago