nsalomonis / altanalyzeLinks
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
☆103Updated 2 years ago
Alternatives and similar repositories for altanalyze
Users that are interested in altanalyze are comparing it to the libraries listed below
Sorting:
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- ☆117Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago
- Tools for single-cell data processing☆125Updated last year
- A SingleCell RNASeq pre-processing snakemake workflow☆149Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆109Updated 7 months ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆178Updated 11 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 3 weeks ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆87Updated 2 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- ☆69Updated 7 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆111Updated 2 weeks ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆111Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆135Updated 10 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated last year
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆101Updated 9 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- ☆81Updated last year
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago