nsalomonis / altanalyzeLinks
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
☆104Updated 3 years ago
Alternatives and similar repositories for altanalyze
Users that are interested in altanalyze are comparing it to the libraries listed below
Sorting:
- ☆118Updated 2 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Tools for single-cell data processing☆126Updated last year
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 10 months ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- ☆69Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆129Updated last year
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- ☆62Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆84Updated 4 months ago
- ☆65Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago
- R package to access DoRothEA's regulons☆150Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆140Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 8 months ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆79Updated 8 years ago
- ☆85Updated 3 weeks ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago