AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
☆104Jul 7, 2022Updated 3 years ago
Alternatives and similar repositories for altanalyze
Users that are interested in altanalyze are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆56Feb 18, 2026Updated 3 months ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ☆73Apr 17, 2024Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆49Sep 1, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Explore the cancer relevance of your gene list☆54May 31, 2026Updated last week
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 6 months ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆304Nov 6, 2025Updated 7 months ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆29Jan 27, 2021Updated 5 years ago
- ☆44Oct 20, 2023Updated 2 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆22Jan 22, 2026Updated 4 months ago
- ☆19Mar 11, 2024Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆486Apr 5, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated last year
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆23Nov 28, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- Single-Cell Genotyping Tool☆218Oct 2, 2023Updated 2 years ago
- A list of alternative splicing analysis resources☆50Mar 26, 2025Updated last year
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 10 months ago
- Cloud-based scalable and efficient single-cell genomics workflows☆68May 6, 2026Updated last month
- Single cell proteomics data processing☆32Apr 6, 2026Updated 2 months ago
- ☆14Aug 31, 2016Updated 9 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 9 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆21Aug 9, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆55Aug 1, 2024Updated last year
- Community-provided extensions to Seurat☆365Feb 17, 2026Updated 3 months ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆21Feb 16, 2026Updated 3 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated last year
- tools to find circRNAs in RNA-seq data☆47Nov 16, 2017Updated 8 years ago
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17May 10, 2026Updated 3 weeks ago