nsalomonis / altanalyzeLinks
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
☆106Updated 3 years ago
Alternatives and similar repositories for altanalyze
Users that are interested in altanalyze are comparing it to the libraries listed below
Sorting:
- ☆120Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 5 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Tools for single-cell data processing☆130Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 2 months ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆132Updated 2 years ago
- ☆62Updated 5 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- chromatin Variability Across Regions (of the genome!)☆184Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated 2 weeks ago
- Genetic multiplexing of barcoded single cell RNA-seq☆131Updated last year
- Mouse cell atlas☆61Updated 5 years ago
- ☆69Updated 7 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Java tools for analyzing Drop-seq data☆131Updated last week
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆113Updated 2 years ago