analysis script for GBM single cell RNA seq data
☆22May 26, 2021Updated 4 years ago
Alternatives and similar repositories for scRNA_GBM
Users that are interested in scRNA_GBM are comparing it to the libraries listed below
Sorting:
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆55Jan 6, 2025Updated last year
- ☆18Oct 4, 2022Updated 3 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- Implementation of Seurat's SpatialFeaturePlot to allow blended expression☆11Feb 28, 2025Updated last year
- A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…☆29Feb 19, 2020Updated 6 years ago
- ☆32Jan 26, 2022Updated 4 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Jan 19, 2025Updated last year
- ☆15Sep 16, 2023Updated 2 years ago
- ☆12Jan 8, 2026Updated 2 months ago
- ☆11May 30, 2023Updated 2 years ago
- Functions for single cell data analysis☆32May 28, 2021Updated 4 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆23Apr 3, 2025Updated 11 months ago
- scEntropy method and scEGMM framework☆17Oct 26, 2019Updated 6 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 8 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- ☆39Aug 4, 2021Updated 4 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Oct 18, 2024Updated last year
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆154Jan 6, 2021Updated 5 years ago
- ☆44May 3, 2021Updated 4 years ago
- ☆71Apr 17, 2024Updated last year
- Code repository for single cell RNA-seq☆41Oct 12, 2020Updated 5 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆20Jul 18, 2024Updated last year
- ☆24Oct 31, 2024Updated last year
- Nature machine intelligence-Stable Cox Regression for Survival Analysis under Distribution Shifts☆23Apr 9, 2025Updated 11 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- Use LSTM neural network for 1D distributional data prediction☆22Sep 29, 2022Updated 3 years ago
- ☆50Jan 16, 2020Updated 6 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 3 months ago
- Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines o…☆26Oct 25, 2020Updated 5 years ago
- A chronological age predictor based on DNA methylation☆22Mar 14, 2024Updated last year
- ☆25Aug 24, 2023Updated 2 years ago
- R package to visualize scRNA sequencing data.☆20Feb 4, 2022Updated 4 years ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- An R package for handling and analysing imaging mass cytometry data☆30Jan 6, 2026Updated 2 months ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆29Nov 21, 2025Updated 3 months ago