mbourgey / scRNA_GBM
analysis script for GBM single cell RNA seq data
☆17Updated 3 years ago
Alternatives and similar repositories for scRNA_GBM:
Users that are interested in scRNA_GBM are comparing it to the libraries listed below
- Lung cancer 10X analysis☆11Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆13Updated last year
- ☆13Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆39Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- ☆10Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆48Updated 5 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- ☆44Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 5 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆26Updated last week
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆16Updated last year
- scWGCNA☆56Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆22Updated this week
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 10 months ago
- ☆54Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago