mbourgey / scRNA_GBMLinks
analysis script for GBM single cell RNA seq data
☆22Updated 4 years ago
Alternatives and similar repositories for scRNA_GBM
Users that are interested in scRNA_GBM are comparing it to the libraries listed below
Sorting:
- ☆50Updated 5 years ago
- ☆14Updated 2 years ago
- ☆62Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 6 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 4 years ago
- R package for Bioconductor submission☆37Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 5 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆36Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated last year
- ☆12Updated 4 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆13Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆17Updated 2 years ago
- ☆41Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 3 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- ☆60Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆35Updated last month