datarail / rnaseq
Deprecated, see https://labsyspharm.github.io/rnaseq/
☆12Updated 6 years ago
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below
Sorting:
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Bedfile perturbation tool☆17Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆22Updated last year
- various bioinformatic instruments☆8Updated 3 months ago
- RNA-seq analysis scripts☆15Updated 2 weeks ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated 10 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆13Updated last week
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 4 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Updated 6 years ago
- Readme☆10Updated 5 years ago
- ☆15Updated 6 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- interactive plots for differential expression analysis☆32Updated last month
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 5 months ago
- DTU analysis tool inspired by llamas☆10Updated 8 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- ☆22Updated last month
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆28Updated 2 weeks ago
- Direct RNA publication scripts☆11Updated 7 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- ☆25Updated 4 years ago