sunericd / svz_singlecell_aging_clocks
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for svz_singlecell_aging_clocks
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆30Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- ☆39Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- ☆47Updated 3 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- ☆37Updated 10 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- ☆42Updated 4 years ago
- cTPnet Package☆23Updated 2 years ago
- Single cell omics biology annotations☆48Updated 2 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- ☆24Updated 3 weeks ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆15Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- ACTIONet single-cell analysis framework☆36Updated 2 months ago
- The scripts used for analyzing JAX mouse dataset☆21Updated 3 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- ☆48Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 9 months ago
- Functions for single cell data analysis☆27Updated 3 years ago