Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases
☆18Aug 11, 2020Updated 5 years ago
Alternatives and similar repositories for CelltypeEvolution
Users that are interested in CelltypeEvolution are comparing it to the libraries listed below
Sorting:
- ☆13Jul 11, 2023Updated 2 years ago
- ☆17Mar 6, 2024Updated last year
- ☆36Sep 25, 2022Updated 3 years ago
- ☆21Dec 23, 2024Updated last year
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated last year
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆28Sep 15, 2023Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 2 years ago
- ☆48Mar 28, 2022Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Dec 29, 2020Updated 5 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31May 20, 2025Updated 9 months ago
- Count HLA alleles in single-cell RNA-seq data☆63Nov 5, 2021Updated 4 years ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- ☆48Jun 24, 2022Updated 3 years ago
- The Self-Assembling-Manifold (SAM) algorithm.☆46Dec 26, 2025Updated 2 months ago
- Construct Tumor Transition Zone Microenvironment☆55Jun 25, 2025Updated 8 months ago
- ☆20Jul 6, 2021Updated 4 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Apr 1, 2024Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 3 years ago
- ☆49Feb 16, 2022Updated 4 years ago
- Analysis for BICCN cross-species primary motor cortex project☆23Feb 13, 2024Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 11 months ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 2 months ago
- ☆22Mar 6, 2023Updated 2 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- The scripts used for the analyses in TOME project☆24Nov 28, 2025Updated 3 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆61May 23, 2022Updated 3 years ago
- Accurate and fast cell marker gene identification with COSG☆62Feb 8, 2026Updated 3 weeks ago
- ☆114Sep 16, 2020Updated 5 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Jan 9, 2026Updated last month
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆121Oct 31, 2025Updated 4 months ago
- ☆71Apr 17, 2024Updated last year
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆11Sep 30, 2024Updated last year