Alternatives and similar repositories for nf-jabba

Users that are interested in nf-jabba are comparing it to the libraries listed below

• asoltis / MutEnricher
  Somatic coding and non-coding mutation enrichment analysis for tumor WGS data
  ☆11Updated 4 years ago
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated 5 months ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• gagneurlab / splicemap
  ☆20Updated 8 months ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 2 months ago
• a2iEditing / deNovo-Detect
  ☆13Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆19Updated 2 weeks ago
• ChrisMaherLab / INTEGRATE-Vis
  ☆15Updated 2 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 5 months ago
• nghiavtr / FuSeq_WES
  ☆11Updated 2 years ago
• ChrisMaherLab / SV-Hotspot
  ☆9Updated 4 years ago
• slagtermaarten / LOHHLA
  Fork of https://bitbucket.org/mcgranahanlab/lohhla
  ☆17Updated 5 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆17Updated last year
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated last month
• Xinglab / rMATS-long
  ☆28Updated 6 months ago
• flemingtonlab / SpliceTools
  ☆17Updated 11 months ago
• mckellardw / STRS
  Suite of analysis tools for spatial total RNA-sequencing
  ☆12Updated last year
• gersteinlab / FunSeq2
  A flexible framework to annotate and prioritize cancer somatic mutations.
  ☆8Updated 8 years ago
• nf-core / omicsgenetraitassociation
  A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
  ☆11Updated last year
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated 3 months ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆12Updated 5 years ago
• cancersysbio / pan-metastasis
  ☆10Updated 5 years ago