mskilab-org / nf-jabbaLinks
☆14Updated 7 months ago
Alternatives and similar repositories for nf-jabba
Users that are interested in nf-jabba are comparing it to the libraries listed below
Sorting:
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- ☆23Updated 5 months ago
- ☆13Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 5 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Updated 4 years ago
- ☆24Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- ☆11Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- ☆22Updated 11 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- ☆17Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 3 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago