mskilab-org / nf-jabba
☆13Updated 9 months ago
Alternatives and similar repositories for nf-jabba:
Users that are interested in nf-jabba are comparing it to the libraries listed below
- ☆20Updated 6 months ago
- ☆11Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last month
- ☆16Updated last month
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 2 weeks ago
- ☆17Updated 8 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- ☆23Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- Pan-transcriptomic phenotyping☆16Updated last month
- Enabling differential allele-specific analysis☆11Updated 3 months ago
- ☆11Updated 6 months ago
- simplified cellranger for long-read data☆18Updated last week
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 11 months ago
- ☆11Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- R Package for phasing of single cell Strand-seq data☆10Updated 3 months ago
- ☆9Updated 3 years ago
- ☆15Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated last month
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year