clara-parabricks-workflows / parabricks-nextflowLinks
Accelerated genomics workflows in NextFlow
☆37Updated 10 months ago
Alternatives and similar repositories for parabricks-nextflow
Users that are interested in parabricks-nextflow are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆69Updated 3 months ago
- cDNA read preprocessing☆75Updated 11 months ago
- SV detection tool for nanopore sequence reads☆93Updated 3 months ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated last week
- Config files used to define parameters specific to compute environments at different Institutions☆101Updated last week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆87Updated 8 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated last year
- TIDDIT - structural variant calling☆74Updated 3 months ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆163Updated last year
- BigWig and BAM utilities☆96Updated last year
- Long read production pipelines☆145Updated 2 weeks ago
- A small-RNA sequencing analysis pipeline☆87Updated last month
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- Accelerated genomics workflows in the Workflow Description Language☆33Updated last year
- Grep for FASTQ files☆98Updated 3 months ago
- ☆98Updated 3 weeks ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆64Updated 3 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆61Updated 3 months ago
- Experimental features for Nextflow☆43Updated 3 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆97Updated last month
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week