clara-parabricks-workflows / parabricks-nextflowLinks
Accelerated genomics workflows in NextFlow
☆38Updated last year
Alternatives and similar repositories for parabricks-nextflow
Users that are interested in parabricks-nextflow are comparing it to the libraries listed below
Sorting:
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 6 years ago
- TIDDIT - structural variant calling☆78Updated last month
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 3 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆76Updated last month
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆106Updated 2 weeks ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated last month
- ☆74Updated 2 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 10 months ago
- A python package and a set of shell commands to handle GTF files☆50Updated 3 weeks ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Updated 2 months ago
- Super small biological datasets for unit testing☆62Updated 6 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆103Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Powerful statistics for VCF files☆73Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 9 months ago
- cDNA read preprocessing☆82Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆47Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- WDL’s and Dockerfiles for assembly QC process☆71Updated 5 months ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Updated 4 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 7 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago