clara-parabricks-workflows / parabricks-nextflowLinks
Accelerated genomics workflows in NextFlow
☆37Updated last year
Alternatives and similar repositories for parabricks-nextflow
Users that are interested in parabricks-nextflow are comparing it to the libraries listed below
Sorting:
- TIDDIT - structural variant calling☆77Updated 7 months ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆71Updated 3 weeks ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- ☆71Updated last week
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated last month
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 7 months ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆104Updated 9 months ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- ☆122Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆37Updated 3 weeks ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- WDL’s and Dockerfiles for assembly QC process☆70Updated 3 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆62Updated 3 weeks ago
- vembrane filters VCF records using python expressions☆66Updated last month
- for visual evaluation of read support for structural variation☆55Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 3 weeks ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated last week
- Super small biological datasets for unit testing☆62Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- ☆46Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆38Updated last year
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago