gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
☆32Jan 28, 2022Updated 4 years ago
Alternatives and similar repositories for gemBS
Users that are interested in gemBS are comparing it to the libraries listed below
Sorting:
- ☆14May 12, 2023Updated 2 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 4 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Feb 15, 2022Updated 4 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated 3 weeks ago
- Reference Genome Independent Differential DNA Methylation Analysis☆11Aug 19, 2021Updated 4 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Updated and optimized fork of BSMAP☆23Dec 28, 2020Updated 5 years ago
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Aug 8, 2025Updated 6 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Jun 21, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- ☆22Feb 5, 2025Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- ☆39Apr 15, 2021Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆35Dec 9, 2025Updated 2 months ago
- sfasta☆35Updated this week
- R package for DNA methylation analysis☆247Jan 18, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 2 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 2 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆40Updated this week
- Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker☆12Nov 11, 2016Updated 9 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆13Dec 22, 2025Updated 2 months ago