walaj / bxtoolsLinks
Tools for analyzing 10X Genomics data
☆42Updated 6 years ago
Alternatives and similar repositories for bxtools
Users that are interested in bxtools are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- ☆78Updated 11 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated this week
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 3 months ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- A read extraction and realignment tool for next generation sequencing data☆100Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago