walaj / bxtools
Tools for analyzing 10X Genomics data
☆42Updated 6 years ago
Alternatives and similar repositories for bxtools:
Users that are interested in bxtools are comparing it to the libraries listed below
- 10x Genomics Reads Simulator☆45Updated last year
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Structural Variant Index☆72Updated 4 months ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- Read visualizer for structural variants☆83Updated 6 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated last month
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago
- ☆39Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago