Simple visualisation tool for sequences' similarity in bioinformatics
☆13Apr 12, 2018Updated 7 years ago
Alternatives and similar repositories for dotplot
Users that are interested in dotplot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- Interim data for the Darwin Tree of Life Project☆33Jun 7, 2020Updated 5 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆116Feb 12, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- String search using the Burrows-Wheeler transform☆19Dec 15, 2019Updated 6 years ago
- Linked-Read Alignment Tool☆26May 16, 2019Updated 6 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Repository for code of the book "Bioinformatics Algorithms" by Miguel Rocha and Pedro Ferreira. Editor: Elsevier☆66Sep 17, 2018Updated 7 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 3 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Custom keyboard using CircuitPython and KMK Firmware on a RP2040 Stamp microcontroller.☆11Apr 13, 2023Updated 2 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 6 years ago
- Galaxy tools and workflows developed at the Earlham Institute☆14Dec 8, 2025Updated 4 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- Parse various Feeds and post them to your Mattermost server!☆11Nov 6, 2022Updated 3 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- Bring Your Own Bioinformatics☆27Apr 28, 2016Updated 9 years ago
- A graph aligner☆31Sep 17, 2024Updated last year
- K-mer Counting for Biological Sequence Analysis☆28Jan 23, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Cytoscape app for importing KGML(KEGG pathway XML)☆26Mar 13, 2026Updated 3 weeks ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated last year
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 3 years ago
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 5 months ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated 8 months ago
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Updated this week
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated last year
- Multifractal analysis in Matlab and Python☆10Mar 25, 2020Updated 6 years ago
- scripts for parsing PDB, fasta, and GO☆16Oct 20, 2021Updated 4 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- Recursive Neural Networks implemented with Tensorflow☆13Nov 5, 2019Updated 6 years ago