LUMC / kPAL
Analysis toolkit and programming library for k-mer profiles
☆30Updated 4 years ago
Alternatives and similar repositories for kPAL:
Users that are interested in kPAL are comparing it to the libraries listed below
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Graph based multi genome aligner☆47Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago
- ☆34Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 5 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- The integrated pipeline for Indel detection☆17Updated 6 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- a string to graph aligner☆41Updated 8 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago