LUMC / kPALLinks
Analysis toolkit and programming library for k-mer profiles
☆31Updated 4 years ago
Alternatives and similar repositories for kPAL
Users that are interested in kPAL are comparing it to the libraries listed below
Sorting:
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- ☆35Updated 5 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- ☆23Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- a string to graph aligner☆41Updated 9 years ago