LUMC / kPALLinks
Analysis toolkit and programming library for k-mer profiles
☆31Updated 4 years ago
Alternatives and similar repositories for kPAL
Users that are interested in kPAL are comparing it to the libraries listed below
Sorting:
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- ☆34Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆20Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- UCSC Nanopore☆43Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 9 years ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year