LUMC / kPALLinks
Analysis toolkit and programming library for k-mer profiles
☆31Updated 4 years ago
Alternatives and similar repositories for kPAL
Users that are interested in kPAL are comparing it to the libraries listed below
Sorting:
- Graph based multi genome aligner☆47Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 9 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- ☆22Updated 2 weeks ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- ☆34Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Population-wide Deletion Calling☆35Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- sort genomic data☆35Updated 5 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago