Alternatives and similar repositories for kPAL

Users that are interested in kPAL are comparing it to the libraries listed below

• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 7 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆59Updated 4 months ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 9 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆52Updated 7 years ago
• tanghaibao / quota-alignment
  Guided synteny alignment between duplicated genomes (within specified quota constraint)
  ☆59Updated 8 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 9 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆35Updated 7 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 9 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• jhhung / PEAT
  An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
  ☆22Updated 5 years ago
• tszalay / poreseq
  Error correction and variant calling algorithm for nanopore sequencing
  ☆26Updated 9 years ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 5 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• kevlar-dev / kevlar
  Reference-free variant discovery in large eukaryotic genomes
  ☆42Updated 4 years ago
• jasperlinthorst / reveal
  Graph based multi genome aligner
  ☆49Updated 4 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆44Updated 6 years ago
• mdcao / npReader
  Read nanopore sequence reads in real-time
  ☆14Updated 9 years ago
• jgurtowski / nanocorr
  Error correction for Oxford Nanopore data
  ☆47Updated 4 years ago
• brentp / gsort
  sort genomic data
  ☆36Updated 3 months ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆16Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆35Updated 6 years ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 6 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆36Updated 2 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆46Updated 2 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• EarlhamInst / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆34Updated 6 years ago
• NCBI-Hackathons / NovoGraph
  NovoGraph: building whole genome graphs from long-read-based de novo assemblies
  ☆46Updated 4 years ago
• 10XGenomics / lariat
  Linked-Read Alignment Tool
  ☆26Updated 6 years ago
• GATB / DiscoSnp
  DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of…
  ☆39Updated 2 years ago