Alternatives and similar repositories for ncbitax2lin

Users that are interested in ncbitax2lin are comparing it to the libraries listed below

• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆129Updated last year
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆174Updated this week
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 4 months ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆221Updated 2 months ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆216Updated last month
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆172Updated 2 months ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆158Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆140Updated 2 years ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆187Updated last week
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆156Updated 3 months ago
• neufeld / pandaseq
  PAired-eND Assembler for DNA sequences
  ☆136Updated 4 years ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆162Updated 2 weeks ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆204Updated last year
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 6 months ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆154Updated 5 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆165Updated this week
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆221Updated this week
• najoshi / sickle
  Windowed Adaptive Trimming for fastq files using quality
  ☆224Updated 8 years ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆121Updated 4 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆363Updated 3 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆333Updated 3 weeks ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆63Updated 2 years ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆180Updated last week
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆214Updated last week
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆216Updated 3 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆146Updated last year
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated 2 months ago
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆224Updated this week
• antismash / antismash
  antiSMASH
  ☆223Updated last month