zyxue / ncbitax2linLinks
π Convert NCBI taxonomy dump into lineages
β147Updated 3 months ago
Alternatives and similar repositories for ncbitax2lin
Users that are interested in ncbitax2lin are comparing it to the libraries listed below
Sorting:
- Download files from NCBI Entrez by accessionβ126Updated 10 months ago
- A robust, extensible metagenomics pipelineβ171Updated last week
- Convert various sequence formats to FASTAβ136Updated 3 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).β206Updated 11 months ago
- FunGAP: fungal Genome Annotation Pipelineβ111Updated last month
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. Itβ¦β164Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profilingβ156Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search forβ¦β153Updated 2 months ago
- A user-friendly workflow for phylogenomicsβ214Updated last week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomesβ150Updated last month
- Pipeline for metabolic annotation of microbial genomesβ149Updated 3 months ago
- Processing pipeline for pan-genome visulization and explorationβ139Updated last year
- A package for designing compact and comprehensive capture probe sets.β87Updated last year
- Metatranscriptomics Tutorialβ63Updated 2 years ago
- Windowed Adaptive Trimming for fastq files using qualityβ221Updated 8 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validateβ¦β117Updated last month
- snipit: summarise snps relative to your reference sequenceβ163Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.β233Updated last week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networksβ184Updated 2 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore dataβ141Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")β75Updated 2 years ago
- Bioinformatics Toolsβ88Updated this week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic dataβ155Updated last week
- BSR-Based Allele Calling Algorithmβ148Updated 3 weeks ago
- Bioinformatics program inStrainβ174Updated 2 months ago
- β137Updated last year
- CAMISIM: Simulating metagenomes and microbial communitiesβ211Updated last week
- Tool to plot synteny and structural rearrangements between genomesβ313Updated 3 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0β214Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learningβ216Updated 3 months ago