Alternatives and similar repositories for ncbitax2lin

Users that are interested in ncbitax2lin are comparing it to the libraries listed below

• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆127Updated 11 months ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 2 months ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆173Updated this week
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆217Updated this week
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆208Updated 11 months ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆152Updated last month
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆211Updated 2 weeks ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆156Updated last year
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆153Updated 3 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆167Updated 3 weeks ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 4 months ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆163Updated 2 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆140Updated last year
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆217Updated this week
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆215Updated last month
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆185Updated last week
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆117Updated 2 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆200Updated last year
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆237Updated last month
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆219Updated last month
• neufeld / pandaseq
  PAired-eND Assembler for DNA sequences
  ☆134Updated 4 years ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆244Updated last year
• gbouras13 / pharokka
  fast phage annotation program
  ☆175Updated this week
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆174Updated 3 months ago
• broadinstitute / catch
  A package for designing compact and comprehensive capture probe sets.
  ☆87Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆149Updated last week
• cmks / DAS_Tool
  DAS Tool
  ☆155Updated last year
• rrwick / Perfect-bacterial-genome-tutorial
  ☆140Updated last year
• BinPro / CONCOCT
  Clustering cONtigs with COverage and ComposiTion
  ☆132Updated 5 years ago