🐞 Convert NCBI taxonomy dump into lineages
☆154Sep 26, 2025Updated last year
Alternatives and similar repositories for ncbitax2lin
Users that are interested in ncbitax2lin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Scripts to download genomes from the NCBI FTP servers☆1,089Apr 7, 2026Updated 6 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆480Jul 15, 2026Updated 3 months ago
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and documentations on the MCSC decontamination method☆10Jun 13, 2023Updated 3 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- ☆22Sep 27, 2019Updated 7 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- REference Sequence annotation and CuRatIon Pipeline☆103Sep 29, 2026Updated 2 weeks ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 8 months ago
- Scripts and libraries for Environmental Genomics☆37Jul 13, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Metagenomic profiling and phylogenetic distances via common kmers☆41Jul 12, 2021Updated 5 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆32Dec 14, 2023Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆479Oct 9, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆794Aug 13, 2026Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆483Sep 14, 2026Updated last month
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Apr 1, 2023Updated 3 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆60Dec 21, 2022Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆76Dec 21, 2023Updated 2 years ago
- A complete pipeline for metagenomic analysis☆453Aug 28, 2026Updated last month
- Microbiome classification pipeline☆67Sep 29, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DAS Tool☆177Oct 9, 2026Updated last week
- AC-DIAMOND is a DNA-protein alignment tool☆17Oct 11, 2023Updated 3 years ago
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 8 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆623Updated this week
- Deblur is a greedy deconvolution algorithm based on known read error profiles.☆102Mar 8, 2025Updated last year
- Maximum likelihood demultiplexing☆54Aug 6, 2026Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆77Dec 17, 2024Updated last year