π Convert NCBI taxonomy dump into lineages
β154Sep 26, 2025Updated 10 months ago
Alternatives and similar repositories for ncbitax2lin
Users that are interested in ncbitax2lin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Confirming specific taxonomic groups within your samples.β19Dec 21, 2020Updated 5 years ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilitiesβ36Oct 30, 2024Updated last year
- Scripts to download genomes from the NCBI FTP serversβ1,082Apr 7, 2026Updated 3 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTVβ475Jul 15, 2026Updated last week
- A robust and fast clustering method for amplicon-based studiesβ30Mar 23, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and documentations on the MCSC decontamination methodβ10Jun 13, 2023Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2β79Aug 30, 2016Updated 9 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service componentβ¦β11Sep 22, 2020Updated 5 years ago
- Application and Python module for average nucleotide identity analyses of microbes.β218Jul 1, 2025Updated last year
- micca - MICrobial Community Analysisβ19Feb 12, 2020Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmersβ42Jul 12, 2021Updated 5 years ago
- Informatic Sequence Classification Treesβ15Jan 23, 2026Updated 6 months ago
- Fast alignment-free pangenome creation and explorationβ28Apr 16, 2020Updated 6 years ago
- blast, shmlastβ21Oct 5, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classesβ31Jun 16, 2024Updated 2 years ago
- Scripts and libraries for Environmental Genomicsβ38Jul 13, 2026Updated 2 weeks ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searchingβ218Apr 24, 2026Updated 3 months ago
- β23Sep 27, 2019Updated 6 years ago
- Fast genome-wide functional annotation through orthology assignmentβ757May 22, 2026Updated 2 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysisβ475Jul 28, 2023Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)β62Apr 1, 2023Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)β74Dec 21, 2023Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimationβ472Dec 16, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- AC-DIAMOND is a DNA-protein alignment toolβ17Oct 11, 2023Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipelineβ101Updated this week
- Microbiome classification pipelineβ67May 13, 2025Updated last year
- A toolbox for improving metagenome-assembled genomes.β64Jun 2, 2021Updated 5 years ago
- Deblur is a greedy deconvolution algorithm based on known read error profiles.β100Mar 8, 2025Updated last year
- GenBank taxonomy processing toolsβ15Jun 30, 2018Updated 8 years ago
- Bacterial genomes finishing tool for structural insights on draft genomesβ23Sep 22, 2023Updated 2 years ago
- Maximum likelihood demultiplexingβ52Updated this week
- A complete pipeline for metagenomic analysisβ451Jul 11, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomesβ14Jun 19, 2017Updated 9 years ago
- β23Apr 3, 2023Updated 3 years ago
- CROP: Clustering 16s rRNA for OTU Predictionβ13May 2, 2017Updated 9 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metageβ¦β233Jul 9, 2026Updated 2 weeks ago
- Reference-agnostic Representation and Visualization of Pan-genomesβ18Sep 16, 2021Updated 4 years ago
- DAS Toolβ177May 2, 2024Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.β616May 20, 2026Updated 2 months ago