tingchenlab / CROP
CROP: Clustering 16s rRNA for OTU Prediction
☆13Updated 7 years ago
Alternatives and similar repositories for CROP:
Users that are interested in CROP are comparing it to the libraries listed below
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- Reproducible Phylogenomics☆22Updated 8 years ago
- blast, shmlast☆22Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Exploring tree diversity☆14Updated 8 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 5 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- ☆26Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Updated 9 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Updated 5 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- R We There Yet?☆30Updated last month
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- ☆18Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- ☆18Updated 2 years ago
- Clustering phylogenetic trees with python☆25Updated 8 months ago
- Fast alignment-free pangenome creation and exploration☆27Updated 5 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Naive PCA for genotype data☆10Updated 8 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated last year