CROP: Clustering 16s rRNA for OTU Prediction
☆13May 2, 2017Updated 8 years ago
Alternatives and similar repositories for CROP
Users that are interested in CROP are comparing it to the libraries listed below
Sorting:
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- long-read depth breaking☆11Apr 19, 2018Updated 7 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 6 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16May 26, 2025Updated 9 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- OBIS Python client☆23Updated this week
- REference Sequence annotation and CuRatIon Pipeline☆99Feb 19, 2026Updated last week
- R package for downstream analysis for anacapa eDNA pipeline☆22Dec 10, 2021Updated 4 years ago
- ☆32Jun 15, 2023Updated 2 years ago
- mPTP - a tool for single-locus species delimitation☆30Sep 19, 2023Updated 2 years ago
- ☆24Aug 9, 2017Updated 8 years ago
- A Lagrangian tool for simulating ichthyoplankton dynamics☆12Feb 25, 2026Updated last week
- Analysis toolkit and programming library for k-mer profiles☆31Mar 11, 2021Updated 4 years ago
- ULTRA Locates Tandemly Repetitive Areas☆41Oct 23, 2025Updated 4 months ago
- eDNA metabarcoding pipeline☆44Jan 22, 2026Updated last month
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- A robust and fast clustering method for amplicon-based studies☆31Mar 23, 2023Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆144Nov 8, 2025Updated 3 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- Basic peer-to-peer websockets with Socket.io☆10Jul 11, 2014Updated 11 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 4 months ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- Webin command line submission program.☆39Feb 18, 2026Updated 2 weeks ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- ☆14Feb 20, 2026Updated last week
- This repo helps me compete in my Fantasy Football League.☆12Dec 8, 2022Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, et…☆42May 7, 2024Updated last year
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- A sample project for super fast real time object detection and counting using CHOOCH AI API and OpenCV.☆10Jan 29, 2021Updated 5 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- CGM 主站☆11Mar 10, 2025Updated 11 months ago
- ☆11Dec 1, 2020Updated 5 years ago
- source files for GloBI website☆10Updated this week
- ☆11Sep 27, 2024Updated last year
- Parallel processing with sequential output, respecting order of input☆10Feb 20, 2023Updated 3 years ago