tingchenlab / CROPLinks
CROP: Clustering 16s rRNA for OTU Prediction
☆13Updated 8 years ago
Alternatives and similar repositories for CROP
Users that are interested in CROP are comparing it to the libraries listed below
Sorting:
- localised duplicate detection on patterned flow cells☆10Updated 6 years ago
- Reproducible Phylogenomics☆22Updated 9 years ago
- blast, shmlast☆21Updated 5 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Updated 10 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Ebola virus surveillance☆15Updated 9 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 12 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Naive PCA for genotype data☆10Updated 9 years ago
- Simple tool to verticalize text delimited files.☆37Updated last year
- ☆18Updated 10 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- SNP genotyping in polyploids☆17Updated 5 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- de novo targeted gene assembly☆22Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- ☆18Updated 8 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- micca - MICrobial Community Analysis☆19Updated 5 years ago