Scripts and libraries for Environmental Genomics
☆38Feb 11, 2025Updated last year
Alternatives and similar repositories for enveomics
Users that are interested in enveomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 5 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated last year
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆18Apr 3, 2022Updated 4 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated last month
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆217Jul 1, 2025Updated 10 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Apr 28, 2025Updated last year
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A scalable bacterial genome assembly, annotation and analysis pipeline☆78Dec 5, 2023Updated 2 years ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆119Jan 29, 2026Updated 4 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated 8 months ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- ☆60Dec 30, 2020Updated 5 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- PaperBLAST: find papers about a protein or its homologs☆52Apr 10, 2026Updated last month
- ☆10Feb 25, 2024Updated 2 years ago
- 🐞 Convert NCBI taxonomy dump into lineages☆153Sep 26, 2025Updated 8 months ago
- ☆30Nov 11, 2016Updated 9 years ago
- Small collection of random useful perl scripts☆21Jun 23, 2014Updated 11 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- An ontology of core ecological entities☆16Dec 14, 2023Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.☆27Nov 21, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Genomic Biodiversity Interest Group☆20Jun 7, 2025Updated 11 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Some useful python scripts for biologists☆33Nov 19, 2024Updated last year
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- AMBER: Assessment of Metagenome BinnERs☆33Apr 14, 2026Updated last month
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆28Nov 3, 2023Updated 2 years ago
- ☆14Dec 12, 2017Updated 8 years ago