16S rRNA database
☆13Nov 29, 2018Updated 7 years ago
Alternatives and similar repositories for taxcollector
Users that are interested in taxcollector are comparing it to the libraries listed below
Sorting:
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Jan 22, 2024Updated 2 years ago
- ☆18Apr 17, 2025Updated 10 months ago
- A very simple BLAST filtering pipeline☆19Mar 28, 2014Updated 11 years ago
- Computational method for Comparative ReConstruction of genome-scale metabolic networks☆21Mar 23, 2018Updated 7 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆95Nov 24, 2025Updated 3 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- ☆10May 31, 2022Updated 3 years ago
- ☆10Oct 6, 2017Updated 8 years ago
- Analysis of Global Burden of Disease data☆12Mar 15, 2021Updated 4 years ago
- A project managing Electronic Health Records(EHR) of patients and giving permissions to audity using Solidity(Etherium Blockchain) with T…☆11Aug 7, 2021Updated 4 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆31Updated this week
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Secretory Pathway Reconstruction for Human, CHO, and Mouse☆12Aug 24, 2021Updated 4 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Optimal mass transport for deformable registration and warping of 2D images☆13Aug 22, 2011Updated 14 years ago
- ☆10Nov 3, 2023Updated 2 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 4 months ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- Draw pan- and core-genome curves from proteinortho output☆10Oct 26, 2023Updated 2 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated last year
- ☆13Feb 12, 2026Updated 3 weeks ago
- This is a read-only mirror of the CRAN R package repository. arulesSequences — Mining Frequent Sequences☆10Nov 25, 2025Updated 3 months ago
- Program to follower and unfollow users.☆13Nov 16, 2019Updated 6 years ago
- Rule-Based Thyroid Whole Slide Image Diagnosis☆10Aug 12, 2020Updated 5 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 6 years ago
- Software for nanopore data analysis☆29Sep 10, 2014Updated 11 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Scoop by Rusty Foster and the CMF running Kuro5hin and other websites☆11Apr 14, 2017Updated 8 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 3 months ago
- ☆15Jun 11, 2018Updated 7 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- The OSDF JSON-Schema files for the HMP project☆14Aug 26, 2021Updated 4 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago