R mased batch sequence downloader, with primer development and in silico evaluation capabilities
☆36Oct 30, 2024Updated last year
Alternatives and similar repositories for PrimerMiner
Users that are interested in PrimerMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 2 months ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Feb 22, 2024Updated 2 years ago
- Distance denoise by Entropy☆15Oct 17, 2025Updated 6 months ago
- ☆18Nov 18, 2025Updated 4 months ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 7 months ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 3 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Jul 31, 2025Updated 8 months ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 8 years ago
- taxonomy R packages☆44Apr 16, 2024Updated 2 years ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🐞 Convert NCBI taxonomy dump into lineages☆153Sep 26, 2025Updated 6 months ago
- Supervised and unsupervised self-organising maps☆12Mar 11, 2026Updated last month
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 4 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- Fast and accurate sequence demultiplexing☆29Mar 18, 2026Updated 3 weeks ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- Pairwise multilevel comparison using adonis☆81Jun 2, 2023Updated 2 years ago
- Learning Finite State Machine Models from Data with a Genetic Algorithm☆11Dec 1, 2025Updated 4 months ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 2 years ago
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆28Mar 8, 2023Updated 3 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later…☆23Jul 5, 2017Updated 8 years ago
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆14Mar 30, 2026Updated 2 weeks ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆10Apr 5, 2026Updated last week
- ☆15Jun 26, 2025Updated 9 months ago
- creating reference databases for amplicon sequencing☆49Jan 13, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago
- ☆12Apr 8, 2021Updated 5 years ago
- EukRef curation pipeline☆13May 11, 2021Updated 4 years ago
- ☆14May 13, 2019Updated 6 years ago
- ☆21Feb 13, 2020Updated 6 years ago