VascoElbrecht / PrimerMiner

Related projects ⓘ

Alternatives and complementary repositories for PrimerMiner

• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆32Updated 2 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last year
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated last year
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆13Updated last year
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆17Updated 5 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆63Updated 11 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆41Updated 2 years ago
• MadsAlbertsen / ampvis
  [deprecated] Please use ampvis2
  ☆8Updated 7 years ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆18Updated 4 years ago
• danknights / sourcetracker
  ☆69Updated 11 months ago
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 9 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆26Updated 4 months ago
• reefgenomics / SymPortal_framework
  SymPortal is an analytical tool used to identify Symbiodiniaceae genotypes using Illumina rDNA ITS2 amplicon NGS data.
  ☆20Updated 9 months ago
• rogotoh / PMiFish
  ☆11Updated 9 months ago
• enormandeau / barque
  eDNA metabarcoding pipeline
  ☆30Updated 2 months ago
• terrimporter / CO1Classifier
  This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…
  ☆31Updated last year
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated 6 months ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆69Updated 2 years ago
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆21Updated last year
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆62Updated 4 months ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆28Updated this week
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 6 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆40Updated 6 months ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆18Updated last year
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆84Updated last month
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆9Updated 2 years ago
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆31Updated 7 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year