VascoElbrecht / PrimerMinerLinks
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
☆36Updated 11 months ago
Alternatives and similar repositories for PrimerMiner
Users that are interested in PrimerMiner are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Various functions for analysis of microbial community data☆46Updated last week
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- ☆78Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 7 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 2 months ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last month
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- ☆12Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 2 months ago
- Sydney Phylogenetics Workshop☆66Updated 2 months ago
- Look Up Guild Information for Fungi in R☆22Updated 6 months ago
- functions for analyzing phyloseq data☆28Updated 8 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 months ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Updated 8 years ago
- functions to analyse sanger sequencing reads in R☆102Updated 7 months ago
- FUNGuild: parsing OTUs into functional guilds☆120Updated last year
- SourceTracker2☆80Updated last year
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago