VascoElbrecht / PrimerMinerLinks
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
☆34Updated 7 months ago
Alternatives and similar repositories for PrimerMiner
Users that are interested in PrimerMiner are comparing it to the libraries listed below
Sorting:
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆66Updated last year
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- functions for analyzing phyloseq data☆27Updated 4 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- ☆12Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 11 months ago
- ☆74Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆15Updated 4 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 months ago
- Sydney Phylogenetics Workshop☆62Updated 5 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- JAMP - Just Another Metabarcoding Pipeline☆35Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month
- EukRef curation pipeline☆13Updated 4 years ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- ☆21Updated 2 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated 2 weeks ago
- Speedy versions of phyloseq functions☆48Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- GraftM - Rapid community profiles from metagenomes☆45Updated 10 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆79Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 4 months ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆22Updated 2 years ago