R mased batch sequence downloader, with primer development and in silico evaluation capabilities
☆36Oct 30, 2024Updated last year
Alternatives and similar repositories for PrimerMiner
Users that are interested in PrimerMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 4 months ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12May 22, 2026Updated 3 weeks ago
- Distance denoise by Entropy☆15Oct 17, 2025Updated 7 months ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- ☆19Updated this week
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 9 months ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 3 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 10 months ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 9 years ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- eDNA metabarcoding pipeline☆47Mar 11, 2026Updated 3 months ago
- 🐞 Convert NCBI taxonomy dump into lineages☆154Sep 26, 2025Updated 8 months ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 4 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- ☆33May 29, 2024Updated 2 years ago
- Fast and accurate sequence demultiplexing☆30Mar 18, 2026Updated 2 months ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- Pairwise multilevel comparison using adonis☆82Jun 2, 2023Updated 3 years ago
- Learning Finite State Machine Models from Data with a Genetic Algorithm☆11Dec 1, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 11 months ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆29Mar 8, 2023Updated 3 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Tools for data enhancement and quality control☆32Feb 26, 2026Updated 3 months ago
- The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later…☆23Jul 5, 2017Updated 8 years ago
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆16Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 5 years ago
- creating reference databases for amplicon sequencing☆51Jan 13, 2026Updated 5 months ago
- ☆15Jun 26, 2025Updated 11 months ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆46Jan 18, 2024Updated 2 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago
- ☆12Apr 8, 2021Updated 5 years ago