Alternatives and similar repositories for pyensembl:

Users that are interested in pyensembl are comparing it to the libraries listed below

• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆466Updated 5 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆797Updated 8 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆460Updated last week
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆316Updated last week
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆609Updated this week
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆705Updated this week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆394Updated this week
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆226Updated 2 months ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆175Updated 3 weeks ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆505Updated last month
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆386Updated last month
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆277Updated 2 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆325Updated last month
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆358Updated last month
• adamewing / bamsurgeon
  tools for adding mutations to existing .bam files, used for testing mutation callers
  ☆239Updated 5 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆339Updated 7 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆540Updated 8 months ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆496Updated this week
• tanghaibao / goatools
  Python library to handle Gene Ontology (GO) terms
  ☆809Updated 4 months ago
• mskcc / vcf2maf
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
  ☆381Updated 3 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆278Updated 8 months ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆292Updated last year
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆377Updated last year
• pcingola / SnpEff
  ☆264Updated last month
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆460Updated 3 weeks ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆400Updated 2 months ago
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆272Updated 9 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆410Updated 2 months ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆425Updated last year
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆390Updated last month