Alternatives and similar repositories for goatools

Users that are interested in goatools are comparing it to the libraries listed below

• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆805Updated 10 months ago
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆626Updated last month
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆755Updated 6 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆616Updated last year
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆523Updated 3 months ago
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,457Updated 9 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆574Updated 9 months ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆720Updated last week
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆468Updated last week
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆856Updated 3 months ago
• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆674Updated 2 years ago
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆956Updated this week
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,297Updated this week
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆392Updated 11 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆468Updated last month
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,004Updated 9 months ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆574Updated 5 months ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆440Updated last year
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆323Updated last week
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,007Updated 3 years ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,025Updated last week
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆501Updated 5 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆418Updated 3 weeks ago
• hbctraining / DGE_workshop
  ☆390Updated 3 years ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆817Updated 2 weeks ago
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆484Updated last year
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆483Updated 4 years ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆735Updated last month
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆678Updated last month
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆603Updated last week