Python library to handle Gene Ontology (GO) terms
☆884Mar 13, 2026Updated last month
Alternatives and similar repositories for goatools
Users that are interested in goatools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library to facilitate genome assembly, annotation, and comparative genomics☆899Apr 2, 2026Updated 2 weeks ago
- Gene Set Enrichment Analysis in Python☆696Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated 2 months ago
- Efficient pythonic random access to fasta subsequences☆484Mar 19, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GO enrichment with python -- pandas meets networkx☆88Jul 15, 2020Updated 5 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400Apr 7, 2026Updated last week
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- Fast genome-wide functional annotation through orthology assignment☆722Mar 24, 2026Updated 3 weeks ago
- Align proteins to genomes with splicing and frameshift☆398Jan 5, 2026Updated 3 months ago
- Tools to process and analyze deep sequencing data.☆757Jul 23, 2025Updated 8 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,154Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,324Apr 8, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A grammar of graphics for comparative genomics☆754Feb 23, 2026Updated last month
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- GFF and GTF file manipulation and interconversion☆316Mar 31, 2026Updated 2 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆671Apr 3, 2026Updated 2 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,439Apr 9, 2026Updated last week
- Jupyter notebook based genomic data visualization toolkit.☆255Dec 4, 2025Updated 4 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,023Apr 4, 2026Updated 2 weeks ago
- Phylogenetic orthology inference for comparative genomics☆849Jul 15, 2025Updated 9 months ago
- Genome-scale protein function classification☆375Apr 10, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accelerated BLAST compatible local sequence aligner.☆1,282Mar 28, 2026Updated 3 weeks ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆293Jan 16, 2026Updated 3 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated last year
- Python library to plot DNA sequence features (e.g. from Genbank files)☆686Jul 2, 2025Updated 9 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆876Mar 11, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- A list of interesting genome browser and genome visualization programs☆1,062Mar 26, 2026Updated 3 weeks ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,420Updated this week
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Program for aligning DNA sequences, a pairwise aligner.☆243Mar 27, 2026Updated 3 weeks ago
- A python extension for quick access to bigWig and bigBed files☆242Jan 14, 2026Updated 3 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,709Updated this week
- 🧬 gget enables efficient querying of genomic reference databases☆1,118Updated this week
- Synteny and Rearrangement Identifier☆460Mar 17, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year