tanghaibao / goatoolsLinks
Python library to handle Gene Ontology (GO) terms
☆874Updated last month
Alternatives and similar repositories for goatools
Users that are interested in goatools are comparing it to the libraries listed below
Sorting:
- python module to plot beautiful and highly customizable genome browser tracks☆862Updated last year
- Gene Set Enrichment Analysis in Python☆687Updated last month
- Bioinformatics code libraries and scripts☆555Updated 6 months ago
- Automatically exported from code.google.com/p/cdhit☆718Updated 3 years ago
- Tools to process and analyze deep sequencing data.☆752Updated 6 months ago
- Efficient pythonic random access to fasta subsequences☆479Updated 4 months ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆399Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆689Updated 7 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,058Updated 5 months ago
- Performant Pythonic GenomicRanges☆493Updated 2 weeks ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆675Updated 6 months ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆717Updated this week
- A list of interesting genome browser and genome visualization programs☆1,042Updated this week
- bedtools - the swiss army knife for genome arithmetic☆1,020Updated 10 months ago
- Phylogenetic orthology inference for comparative genomics☆823Updated 6 months ago
- A deep learning-based tool to identify splice variants☆477Updated 6 months ago
- A tool to find sequencing data and metadata from public databases.☆592Updated last year
- A list of useful bioinformatics resources☆622Updated 8 months ago
- A quality control analysis tool for high throughput sequencing data☆568Updated 2 weeks ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,179Updated 2 weeks ago
- Trinity RNA-Seq de novo transcriptome assembly☆880Updated 11 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,518Updated 7 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆767Updated last month
- Python library to facilitate genome assembly, annotation, and comparative genomics☆884Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆535Updated 6 months ago
- Incubator for useful bioinformatics code, primarily in Python and R☆644Updated 11 months ago
- List of software packages for multi-omics analysis☆887Updated 2 weeks ago
- SRA Tools☆1,292Updated last week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆877Updated last week
- Bioinformatics one liners from Ming Tang☆500Updated 5 years ago