PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
☆303Feb 17, 2025Updated last year
Alternatives and similar repositories for PyWGCNA
Users that are interested in PyWGCNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆763Updated this week
- Gene Set Enrichment Analysis in Python☆711Sep 2, 2026Updated last month
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆406Sep 1, 2026Updated last month
- Python package to perform enrichment analysis from omics data.☆296Updated this week
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆67May 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆91Mar 19, 2026Updated 6 months ago
- trajectory inference☆109Jan 27, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆70Jan 19, 2026Updated 8 months ago
- ☆16Apr 8, 2026Updated 6 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Updated this week
- CellRank: dynamics from multi-view single-cell data☆457Updated this week
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆324Sep 26, 2026Updated last week
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,218Sep 23, 2026Updated 2 weeks ago
- A tool for semi-automatic cell type classification☆510May 22, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LIANA+: an all-in-one framework for cell-cell communication☆319Sep 24, 2026Updated 2 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated last month
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 3 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆642Jun 26, 2025Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated 3 weeks ago
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated 2 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆266Jan 16, 2026Updated 8 months ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- Multiome GRN inference.☆144Apr 10, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python implementation of Gene Trajectory☆29Sep 4, 2024Updated 2 years ago
- Network construction Algorithm☆23Sep 5, 2024Updated 2 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆29Jul 17, 2025Updated last year
- an R package for deep mining gene co-expression networks in multi-trait expression data☆25Jan 23, 2026Updated 8 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆134Aug 3, 2026Updated 2 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Reference mapping for single-cell genomics☆412Jun 26, 2026Updated 3 months ago
- Legend made easy for matplotlib☆36Aug 27, 2026Updated last month
- ☆33May 4, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Metacells - Single-cell RNA Sequencing Analysis☆131Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆475Apr 11, 2026Updated 5 months ago
- Detect doublets in single-cell RNA-seq data☆182Dec 29, 2020Updated 5 years ago
- ☆136Aug 23, 2026Updated last month
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated 11 months ago
- Non-parametric density inference for single-cell analysis.☆77Sep 24, 2026Updated 2 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆127Aug 24, 2026Updated last month