PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
☆307Feb 17, 2025Updated last year
Alternatives and similar repositories for PyWGCNA
Users that are interested in PyWGCNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆768Updated this week
- Gene Set Enrichment Analysis in Python☆716Sep 2, 2026Updated last month
- Python package to perform enrichment analysis from omics data.☆300Updated this week
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆408Oct 22, 2026Updated last week
- python API to the CoGAPS NMF package☆23Jul 24, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆67May 12, 2021Updated 5 years ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated 2 years ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆649Jun 26, 2025Updated last year
- an R package for deep mining gene co-expression networks in multi-trait expression data☆26Jan 23, 2026Updated 9 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Updated this week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- trajectory inference☆109Jan 27, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 2 weeks ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,391Updated this week
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆327Updated this week
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆427Sep 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is the alpha version of the CellOracle package☆508Apr 30, 2026Updated 6 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆324Oct 9, 2026Updated 3 weeks ago
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆29Jul 17, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 9 months ago
- Spatial Single Cell Analysis in Python☆612Updated this week
- ☆167Mar 20, 2026Updated 7 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆482Apr 11, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆408Updated this week
- ☆136Aug 23, 2026Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆75Jul 9, 2026Updated 3 months ago
- Non-parametric density inference for single-cell analysis.☆77Sep 24, 2026Updated last month
- Spatial Transcriptomics Capture Location Deconvolution☆216Oct 20, 2025Updated last year
- A tool for semi-automatic cell type harmonization and integration☆125Mar 9, 2026Updated 7 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago