PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
☆299Feb 17, 2025Updated last year
Alternatives and similar repositories for PyWGCNA
Users that are interested in PyWGCNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆750Updated this week
- Gene Set Enrichment Analysis in Python☆696Apr 29, 2026Updated 3 weeks ago
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆383May 15, 2026Updated last week
- Python package to perform enrichment analysis from omics data.☆268Updated this week
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆67May 12, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆86Mar 19, 2026Updated 2 months ago
- trajectory inference☆109Jan 27, 2025Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆269Apr 26, 2026Updated 3 weeks ago
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆318Apr 25, 2026Updated 3 weeks ago
- ☆15Apr 8, 2026Updated last month
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 2 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- A tool for semi-automatic cell type classification☆476May 17, 2026Updated last week
- High dimensional weighted gene co-expression network analysis☆474Mar 13, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LIANA+: an all-in-one framework for cell-cell communication☆289May 14, 2026Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆188Mar 27, 2025Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆606Jun 26, 2025Updated 10 months ago
- python API to the CoGAPS NMF package☆21May 19, 2025Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 10 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆397May 6, 2026Updated 2 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆256Jan 16, 2026Updated 4 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆989May 17, 2026Updated last week
- R implementation of GeneTrajectory☆70May 9, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multiome GRN inference.☆135Apr 10, 2026Updated last month
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Network construction Algorithm☆23Sep 5, 2024Updated last year
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Legend made easy for matplotlib☆36May 6, 2026Updated 2 weeks ago
- ☆33May 4, 2025Updated last year
- The single T cell annotation tool for scRNA-seq data☆26Apr 25, 2025Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆439Apr 11, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 14, 2026Updated last month
- Detect doublets in single-cell RNA-seq data☆175Dec 29, 2020Updated 5 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- ☆130Mar 27, 2022Updated 4 years ago
- Non-parametric density inference for single-cell analysis.☆74Apr 10, 2026Updated last month
- Python implementation of the Slingshot pseudotime algorithm☆76Oct 28, 2025Updated 6 months ago
- ☆25Jan 9, 2024Updated 2 years ago