scverse / anndataLinks
Annotated data.
☆707Updated this week
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below
Sorting:
- Spatial Single Cell Analysis in Python☆550Updated last week
- CellRank: dynamics from multi-view single-cell data☆420Updated 2 weeks ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆490Updated 2 weeks ago
- muon is a multimodal omics Python framework☆262Updated 3 weeks ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆296Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆415Updated 3 weeks ago
- RNA Velocity generalized through dynamical modeling☆486Updated last month
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆252Updated last week
- Benchmarking analysis of data integration tools☆406Updated 4 months ago
- Reference mapping for single-cell genomics☆398Updated 2 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆420Updated 2 months ago
- A tool for semi-automatic cell type classification☆451Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆407Updated 5 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆265Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆416Updated last week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆573Updated 7 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,557Updated last week
- Gene Set Enrichment Analysis in Python☆689Updated last month
- An interactive explorer for single-cell transcriptomics data☆751Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆464Updated 8 months ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆378Updated last year
- Single-cell perturbation analysis☆283Updated last week
- Spatial alignment of single cell transcriptomic data.☆352Updated 7 months ago
- Scanpy Tutorials.☆234Updated last week
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆438Updated last week
- Examples of single-cell genomic analysis accelerated with RAPIDS☆346Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆375Updated 6 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆245Updated last week
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆725Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆620Updated 4 months ago