scverse / anndataLinks
Annotated data.
☆705Updated this week
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below
Sorting:
- Spatial Single Cell Analysis in Python☆550Updated this week
- CellRank: dynamics from multi-view single-cell data☆413Updated last week
- muon is a multimodal omics Python framework☆262Updated last week
- Benchmarking analysis of data integration tools☆404Updated 4 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆246Updated 3 weeks ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆294Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆420Updated 2 months ago
- RNA Velocity generalized through dynamical modeling☆485Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆572Updated 7 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆415Updated last week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆488Updated last week
- Reference mapping for single-cell genomics☆397Updated last month
- Deep probabilistic analysis of single-cell and spatial omics data☆1,548Updated this week
- Gene Set Enrichment Analysis in Python☆689Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆402Updated 5 months ago
- A tool for semi-automatic cell type classification☆450Updated 3 weeks ago
- Single-cell perturbation analysis☆281Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆263Updated last week
- This is the alpha version of the CellOracle package☆413Updated last year
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆460Updated 7 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆437Updated 3 weeks ago
- An open and interoperable data framework for spatial omics data☆342Updated this week
- Differential expression analysis for single-cell RNA-seq data.☆206Updated 3 months ago
- Single cell perturbation prediction☆333Updated last year
- Single-cell analysis in Python. Scales to >100M cells.☆2,334Updated last week
- Scanpy Tutorials.☆232Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆245Updated this week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆618Updated 3 months ago
- An interactive explorer for single-cell transcriptomics data☆745Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆374Updated 6 months ago