scverse / anndata
Annotated data.
☆579Updated this week
Related projects ⓘ
Alternatives and complementary repositories for anndata
- Single-cell analysis in Python. Scales to >1M cells.☆1,924Updated this week
- Spatial Single Cell Analysis in Python☆440Updated this week
- CellRank: dynamics from multi-view single-cell data☆350Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆444Updated 7 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆421Updated 3 weeks ago
- RNA Velocity generalized through dynamical modeling☆418Updated last month
- Benchmarking analysis of data integration tools☆309Updated last month
- Deep probabilistic analysis of single-cell and spatial omics data☆1,252Updated this week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆528Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆335Updated last month
- Reference mapping for single-cell genomics☆335Updated 3 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆321Updated this week
- muon is a multimodal omics Python framework☆218Updated 3 weeks ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆321Updated last month
- ☆344Updated 2 weeks ago
- https://www.sc-best-practices.org☆782Updated 2 weeks ago
- Single cell trajectory detection☆224Updated this week
- This is the alpha version of the CellOracle package☆313Updated last week
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆345Updated last month
- Gene Set Enrichment Analysis in Python☆569Updated last week
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆200Updated 4 months ago
- ☆345Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆416Updated 6 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆297Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cells☆489Updated 2 months ago
- 10x Genomics Single Cell Analysis☆366Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆276Updated 2 months ago
- A tool for semi-automatic cell type classification☆302Updated 5 months ago
- A list of scRNA-seq analysis tools☆635Updated this week
- Table of software for the analysis of single-cell RNA-seq data.☆309Updated this week