scverse / anndataLinks
Annotated data.
☆696Updated this week
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below
Sorting:
- Spatial Single Cell Analysis in Python☆544Updated last week
- CellRank: dynamics from multi-view single-cell data☆411Updated last month
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆477Updated last week
- muon is a multimodal omics Python framework☆257Updated 2 weeks ago
- Benchmarking analysis of data integration tools☆397Updated 3 months ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆284Updated this week
- RNA Velocity generalized through dynamical modeling☆481Updated last month
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆403Updated 2 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆414Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆564Updated 6 months ago
- Reference mapping for single-cell genomics☆396Updated 3 weeks ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆245Updated last year
- This is the alpha version of the CellOracle package☆404Updated 11 months ago
- Gene Set Enrichment Analysis in Python☆680Updated last week
- A tool for semi-automatic cell type classification☆440Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆395Updated 4 months ago
- Scanpy Tutorials.☆230Updated this week
- Single-cell perturbation analysis☆224Updated last week
- Single cell perturbation prediction☆328Updated last year
- starfish: unified pipelines for image-based transcriptomics☆243Updated 2 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆253Updated last week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,520Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆452Updated 6 months ago
- Spatial alignment of single cell transcriptomic data.☆344Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆368Updated 4 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆242Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆424Updated 5 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆433Updated last week
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆375Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆616Updated 2 months ago