PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
☆404Aug 19, 2026Updated last week
Alternatives and similar repositories for PyComplexHeatmap
Users that are interested in PyComplexHeatmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆321Aug 23, 2026Updated last week
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆760Updated this week
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆300Feb 17, 2025Updated last year
- Gene Set Enrichment Analysis in Python☆709Aug 5, 2026Updated 3 weeks ago
- Python package to perform enrichment analysis from omics data.☆292Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated 10 months ago
- Normalization of RNA-seq gene expression☆106Jul 8, 2025Updated last year
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,191Updated this week
- Single-cell epigenomics analysis tools☆323Aug 15, 2026Updated 2 weeks ago
- Performant Pythonic GenomicRanges☆492Apr 23, 2026Updated 4 months ago
- Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)☆1,115Jun 14, 2026Updated 2 months ago
- Jupyter notebook based genomic data visualization toolkit.☆260Updated this week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆288Jun 16, 2025Updated last year
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- python module to plot beautiful and highly customizable genome browser tracks☆898Updated this week
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Legend made easy for matplotlib☆36Updated this week
- 🧬 gget enables efficient querying of genomic reference databases☆1,189Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,549Updated this week
- Tool for plotting sequencing data along genomic coordinates.☆351Dec 12, 2025Updated 8 months ago
- https://www.sc-best-practices.org☆1,256Updated this week
- 🧬 Gene analysis toolkit based on R☆63Jan 6, 2025Updated last year
- add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different…☆856Jan 8, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- genes and genomes at your fingertips☆410Jun 9, 2026Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆109Aug 10, 2026Updated 2 weeks ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆91Aug 21, 2026Updated last week
- Genomic interval operations on Pandas DataFrames☆195Aug 3, 2026Updated 3 weeks ago
- Multimodal Data (.h5mu) implementation for Python☆132Updated this week
- Make Complex Heatmaps☆1,540Apr 2, 2026Updated 4 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆632Jun 26, 2025Updated last year
- A declarative interactive genomics visualization library for Python.☆242Nov 24, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Spatial Single Cell Analysis in Python☆595Updated this week
- ☆129Sep 4, 2025Updated 11 months ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib and seaborn.☆438Dec 4, 2025Updated 8 months ago
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆130Aug 3, 2026Updated 3 weeks ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆22Sep 12, 2023Updated 2 years ago