PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
☆374Mar 13, 2026Updated last week
Alternatives and similar repositories for PyComplexHeatmap
Users that are interested in PyComplexHeatmap are comparing it to the libraries listed below
Sorting:
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆309Feb 3, 2026Updated last month
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆292Feb 17, 2025Updated last year
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆740Updated this week
- Gene Set Enrichment Analysis in Python☆694Mar 10, 2026Updated last week
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆857Mar 12, 2026Updated last week
- Python package to perform enrichment analysis from omics data.☆262Mar 10, 2026Updated last week
- Python implementation of the Slingshot pseudotime algorithm☆71Oct 28, 2025Updated 4 months ago
- Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)☆1,054Oct 3, 2025Updated 5 months ago
- Single-cell epigenomics analysis tools☆311Mar 13, 2026Updated last week
- Jupyter notebook based genomic data visualization toolkit.☆253Dec 4, 2025Updated 3 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Jun 16, 2025Updated 9 months ago
- Normalization of RNA-seq gene expression☆105Jul 8, 2025Updated 8 months ago
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆867Jul 10, 2024Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,108Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,367Mar 13, 2026Updated last week
- Legend made easy for matplotlib☆34Jun 7, 2025Updated 9 months ago
- https://www.sc-best-practices.org☆1,164Mar 9, 2026Updated last week
- 🧬 Gene analysis toolkit based on R☆62Jan 6, 2025Updated last year
- add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different…☆830Jan 8, 2026Updated 2 months ago
- genes and genomes at your fingertips☆410Mar 5, 2026Updated 2 weeks ago
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 3 months ago
- CellRank: dynamics from multi-view single-cell data☆433Mar 9, 2026Updated last week
- Genomic interval operations on Pandas DataFrames☆190Mar 2, 2026Updated 2 weeks ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆585Jun 26, 2025Updated 8 months ago
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 3 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆316Updated this week
- Make Complex Heatmaps☆1,475Jan 30, 2026Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆100Feb 24, 2026Updated 3 weeks ago
- Spatial Single Cell Analysis in Python☆555Updated this week
- A tool for semi-automatic cell type classification☆459Mar 13, 2026Updated last week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib and seaborn.☆434Dec 4, 2025Updated 3 months ago
- ☆122Sep 4, 2025Updated 6 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Mar 9, 2026Updated last week
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆201Updated this week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Mar 12, 2026Updated last week
- ☆41Feb 12, 2026Updated last month