Alternatives and similar repositories for PyComplexHeatmap

Users that are interested in PyComplexHeatmap are comparing it to the libraries listed below

• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆251Updated 4 months ago
• Marsilea-viz / marsilea
  Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
  ☆271Updated last month
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆639Updated 3 weeks ago
• reneshbedre / bioinfokit
  Bioinformatics data analysis and visualization toolkit
  ☆353Updated last year
• dylkot / cNMF
  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
  ☆343Updated 3 months ago
• scverse / muon
  muon is a multimodal omics Python framework
  ☆239Updated 3 months ago
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆207Updated this week
• ponnhide / pyCircos
  python Circos
  ☆358Updated last year
• aristoteleo / spateo-release
  Spatiotemporal modeling of spatial transcriptomics
  ☆303Updated this week
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆414Updated 3 weeks ago
• STOmics / Stereopy
  A toolkit of spatial transcriptomic analysis.
  ☆253Updated last week
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆302Updated 3 months ago
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆198Updated 4 months ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆363Updated 5 months ago
• theislab / cellrank
  CellRank: dynamics from multi-view single-cell data
  ☆389Updated 2 months ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆239Updated 2 months ago
• scverse / spatialdata
  An open and interoperable data framework for spatial omics data
  ☆289Updated 2 weeks ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆370Updated last month
• scverse / squidpy
  Spatial Single Cell Analysis in Python
  ☆492Updated last week
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆233Updated 2 weeks ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆284Updated last week
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆375Updated last month
• BiomedicalMachineLearning / stLearn
  A novel machine learning pipeline to analyse spatial transcriptomics data
  ☆224Updated last week
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆218Updated 11 months ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆361Updated 5 months ago
• saezlab / liana-py
  LIANA+: an all-in-one framework for cell-cell communication
  ☆218Updated this week
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆215Updated this week
• bioFAM / MOFA2
  Multi-Omics Factor Analysis
  ☆339Updated 11 months ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆163Updated this week
• dmcable / spacexr
  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …
  ☆375Updated last month