guilledufort / EnanoFASTQLinks
A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.
☆10Updated 4 years ago
Alternatives and similar repositories for EnanoFASTQ
Users that are interested in EnanoFASTQ are comparing it to the libraries listed below
Sorting:
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- An Fast variant calling tool to detection germline and somatic variants☆10Updated last year
- ☆28Updated last month
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆16Updated last year
- ☆16Updated 3 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- ☆14Updated 2 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆12Updated 2 years ago
- ☆14Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 6 months ago
- Long read to reference genome mapping tool☆13Updated last year
- Validation of sycnmers compared to minimizers☆11Updated 3 weeks ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆25Updated 4 years ago
- ☆10Updated 4 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- A tool to detect structural variant☆18Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆17Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago