MrOlm / tRep
Quickly get the taxonomy of a genome
☆10Updated last year
Related projects ⓘ
Alternatives and complementary repositories for tRep
- Prediction of microbial interactions in complex communities☆12Updated 3 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆29Updated 3 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆21Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated last month
- ☆16Updated 4 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 7 months ago
- Systematic resistome analysis☆10Updated 4 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆11Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- Identify and remove contaminants from metagenome-assembled genomes☆17Updated 9 months ago
- strain-level analysis tools☆33Updated last month
- MAG Circularization Method☆33Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated last month
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- ☆23Updated 9 months ago
- Identifying misassemblies via deep learning☆11Updated 6 months ago
- ☆21Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆20Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆12Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 weeks ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆21Updated last year