amromics / pantaLinks
Pan-genome Analysis
☆12Updated 7 months ago
Alternatives and similar repositories for panta
Users that are interested in panta are comparing it to the libraries listed below
Sorting:
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- De novo VIral Genome Annotator☆23Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- ☆43Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Updated 2 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 3 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Updated 2 weeks ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆17Updated 2 weeks ago
- ☆13Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆15Updated last month
- scripts for microbiome analysis☆11Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Updated 3 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- software to identify primers that can distinguish genomes☆20Updated last week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago