amromics / pantaLinks
Pan-genome Analysis
☆12Updated 9 months ago
Alternatives and similar repositories for panta
Users that are interested in panta are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 11 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆35Updated last month
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Updated 2 months ago
- ☆13Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Updated 3 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- De novo VIral Genome Annotator☆24Updated last month
- ☆10Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Updated 4 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated 2 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated 3 weeks ago
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year