Pan-genome Analysis
☆12May 4, 2025Updated last year
Alternatives and similar repositories for panta
Users that are interested in panta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jun 5, 2026Updated last month
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 6 months ago
- ☆14Apr 3, 2025Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆61May 24, 2026Updated 2 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- The GAN model for designing AMP☆17Aug 19, 2025Updated 11 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 5 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 5 months ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Updated this week
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 5 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆20Jun 23, 2026Updated last month
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA☆14Apr 16, 2025Updated last year
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 3 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 3 months ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated 2 years ago
- Animations of tidyverse verbs using R, the tidyverse, and gganimate☆13Sep 22, 2019Updated 6 years ago
- Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.☆14Sep 29, 2020Updated 5 years ago
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Jun 1, 2026Updated last month
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- metabolic heatmap☆22May 12, 2019Updated 7 years ago
- Host prediction for phages☆28Nov 6, 2024Updated last year
- ☆16Jun 18, 2020Updated 6 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☆37Nov 5, 2025Updated 8 months ago
- ☆23May 8, 2023Updated 3 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 8 years ago