☆25Mar 3, 2020Updated 6 years ago
Alternatives and similar repositories for SCIPhI
Users that are interested in SCIPhI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 6 years ago
- ☆24Oct 15, 2018Updated 7 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆23Jul 11, 2024Updated 2 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆16Apr 7, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Apr 13, 2020Updated 6 years ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated 2 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Feb 27, 2026Updated 6 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆38Mar 5, 2021Updated 5 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- Repository for the clone2vec python package☆25Sep 8, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆25Feb 21, 2022Updated 4 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆23Jan 8, 2026Updated 8 months ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- ☆14Jul 28, 2023Updated 3 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆100Jul 23, 2026Updated 2 months ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 8 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- ☆12Jul 13, 2018Updated 8 years ago
- A software toolkit for the interconversion of standard data models for phenotypic data☆18Updated this week
- ☆10May 31, 2022Updated 4 years ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆10Sep 27, 2022Updated 3 years ago
- A Cytoscape.js extension for the hierarchical clustering algorithm☆10Jul 26, 2017Updated 9 years ago
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 3 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 7 months ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 11 months ago
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated 5 months ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago