iandunham / Forge

Related projects ⓘ

Alternatives and complementary repositories for Forge

• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆11Updated 5 years ago
• smgogarten / GWASTools
  Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
  ☆16Updated last week
• hakha-most / gwas_eqtl
  ☆16Updated last year
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆20Updated last year
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 5 years ago
• Nealelab / whole_genome_analysis_pipeline
  ☆16Updated last year
• jackhump / WGS-QC-Pipeline
  A Snakemake pipeline for Quality Control of Whole Genome Sequencing data
  ☆13Updated 2 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆17Updated 2 weeks ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆14Updated 7 months ago
• yuanzhongshang / GIFT
  ☆17Updated 2 weeks ago
• hakyimlab / phenomexcan
  PhenomeXcan: mapping the genome to the phenome through the transcriptome
  ☆11Updated 4 years ago
• swvanderlaan / MetaGWASToolKit
  A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
  ☆15Updated last week
• uqrmaie1 / smtpred
  SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…
  ☆15Updated 7 years ago
• naim-panjwani / LocusFocus
  Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  ☆9Updated 2 weeks ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• gagneurlab / splicemap
  ☆18Updated 3 weeks ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 4 years ago
• roman-tremmel / ggfastman
  Fast manhattenplots using ggplot2
  ☆9Updated 8 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 3 months ago
• xqwen / ptwas
  ☆17Updated 3 years ago
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆17Updated last month
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆15Updated 7 months ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆18Updated 2 months ago
• hakyimlab / gtex-gwas-analysis
  ☆21Updated 3 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 4 years ago
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆18Updated last month
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆28Updated 2 years ago
• GP2code / GenoTools
  A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps…
  ☆13Updated 2 weeks ago
• MRCIEU / PhenoSpD
  ☆18Updated 6 years ago