🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
☆74Sep 10, 2025Updated last year
Alternatives and similar repositories for poppr
Users that are interested in poppr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- A primer for computational tools to analyze genetics of populations in R☆92Sep 11, 2026Updated last week
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated last year
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- adegenet: a R package for the multivariate analysis of genetic markers☆201Feb 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant path…☆23Aug 8, 2024Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆40May 21, 2024Updated 2 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆31Sep 27, 2019Updated 6 years ago
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- An R package for the spatial analysis of population genetic data.☆20Sep 13, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- Open Plant Pathology website☆21Oct 1, 2024Updated last year
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆27Mar 8, 2026Updated 6 months ago
- ☆12Feb 16, 2025Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆116Jun 17, 2026Updated 3 months ago
- Population assignment analysis using R☆16Updated this week
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Continuous mapping of genetic diversity☆17Apr 28, 2026Updated 4 months ago
- Pipeline to take VCF through to Selection Analysis.☆59Dec 11, 2022Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆22Aug 14, 2026Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- RADseq Data Exploration, Manipulation and Visualization using R☆61Aug 20, 2026Updated last month
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Vignettes for Population Genetics in R☆26Aug 11, 2020Updated 6 years ago
- Package for multi-environment trial analysis☆40Oct 16, 2024Updated last year
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Pangenome-based genome inference☆181Sep 15, 2026Updated last week