grunwaldlab / popprView external linksLinks
πΆ An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
β72Sep 10, 2025Updated 5 months ago
Alternatives and similar repositories for poppr
Users that are interested in poppr are comparing it to the libraries listed below
Sorting:
- This site provides information on conducting reproducible science using the R language.β13Nov 2, 2016Updated 9 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.β¦β16Sep 12, 2025Updated 5 months ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasetsβ17Feb 19, 2022Updated 3 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverickβ12Jun 21, 2018Updated 7 years ago
- A primer for computational tools to analyze genetics of populations in Rβ90Feb 11, 2021Updated 5 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettesβ29Sep 27, 2019Updated 6 years ago
- Draw genetic map (linkage map) in Rβ13Nov 12, 2017Updated 8 years ago
- adegenet: a R package for the multivariate analysis of genetic markersβ198Feb 7, 2025Updated last year
- diveRsity: A comprehensive, general purpose population genetics analysis package.β26Feb 16, 2018Updated 7 years ago
- Simple and flexible manipulation of genomic data.β16Apr 16, 2025Updated 9 months ago
- An R package for the spatial analysis of population genetic data.β20Jun 28, 2025Updated 7 months ago
- Analyze and simulate Pool-Seq time series dataβ17Jun 16, 2022Updated 3 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in Rβ38May 21, 2024Updated last year
- Minimal Assumption Genomic Inference of Coalescenceβ14Aug 8, 2023Updated 2 years ago
- your friendly pangenome graph genotyperβ10Feb 6, 2023Updated 3 years ago
- β12Feb 16, 2025Updated 11 months ago
- ABLE - Approximate Blockwise Likelihood Estimationβ17Jul 4, 2018Updated 7 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.β54Mar 7, 2025Updated 11 months ago
- β21Dec 30, 2025Updated last month
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/speciesβ183Dec 19, 2024Updated last year
- Homologizer: phasing gene copies into polyploid subgenomesβ11Feb 3, 2026Updated last week
- β10Nov 4, 2021Updated 4 years ago
- A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant pathβ¦β23Aug 8, 2024Updated last year
- An application to compare genetic maps with D3 & Shinyβ22Feb 28, 2023Updated 2 years ago
- Population assignment analysis using Rβ15Jul 4, 2025Updated 7 months ago
- Software for detecting introgression using supervised machine learningβ21Nov 21, 2022Updated 3 years ago
- reference free variant assemblyβ34Jul 14, 2023Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) filesβ202Aug 15, 2024Updated last year
- Infer demographic history with the Moran modelβ51Jun 14, 2025Updated 7 months ago
- Fast, accurate species tree estimation.β12Aug 29, 2024Updated last year
- CPANG19 - Computational PANGenomics (2019)β12May 7, 2020Updated 5 years ago
- deep learning prediction of geographic location from individual genome sequencesβ52Jan 20, 2025Updated last year
- Pangenome-based genome inferenceβ155Dec 1, 2025Updated 2 months ago
- β12Nov 23, 2020Updated 5 years ago
- an ensemble usage of MAFFT-linsi --add on large datasetsβ13May 31, 2024Updated last year
- Pipeline to take VCF through to Selection Analysis.β58Dec 11, 2022Updated 3 years ago
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)β110Oct 21, 2025Updated 3 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphsβ26Apr 29, 2024Updated last year
- β13Aug 18, 2023Updated 2 years ago