🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
☆72Sep 10, 2025Updated 10 months ago
Alternatives and similar repositories for poppr
Users that are interested in poppr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- A primer for computational tools to analyze genetics of populations in R☆91Feb 11, 2021Updated 5 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated 10 months ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- adegenet: a R package for the multivariate analysis of genetic markers☆201Feb 7, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant path…☆23Aug 8, 2024Updated last year
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆40May 21, 2024Updated 2 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆31Sep 27, 2019Updated 6 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated last year
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- An R package for the spatial analysis of population genetic data.☆20Jun 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Open Plant Pathology website☆21Oct 1, 2024Updated last year
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆27Mar 8, 2026Updated 4 months ago
- ☆12Feb 16, 2025Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆114Jun 17, 2026Updated last month
- Population assignment analysis using R☆16Jul 4, 2025Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Continuous mapping of genetic diversity☆18Apr 28, 2026Updated 2 months ago
- Pipeline to take VCF through to Selection Analysis.☆59Dec 11, 2022Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆57Mar 7, 2025Updated last year
- ☆22Jun 24, 2026Updated last month
- SMC++ infers population history from whole-genome sequence data.☆177Jan 20, 2024Updated 2 years ago
- RADseq Data Exploration, Manipulation and Visualization using R☆61Sep 4, 2025Updated 10 months ago
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆209Jul 16, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Vignettes for Population Genetics in R☆26Aug 11, 2020Updated 5 years ago
- Package for multi-environment trial analysis☆39Oct 16, 2024Updated last year
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Pangenome-based genome inference☆176Jun 15, 2026Updated last month