Alternatives and similar repositories for breedR:

Users that are interested in breedR are comparing it to the libraries listed below

• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆70Updated 11 months ago
• covaruber / sommer
  ☆47Updated this week
• MrodesBook / Examples_R
  ☆23Updated last year
• yzhlinscau / AFEchidna
  Added functions for Echidna in R
  ☆11Updated 2 years ago
• cran / sommer
   This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…
  ☆16Updated 2 weeks ago
• TiagoOlivoto / metan
  Package for multi-environment trial analysis
  ☆34Updated 6 months ago
• Biometris / statgenGWAS
  See https://biometris.github.io/statgenGWAS for a full description
  ☆14Updated last week
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆148Updated last year
• jgx65 / hierfstat
  the hierfstat package
  ☆24Updated 4 months ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆29Updated last month
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 6 years ago
• EricArcher / strataG
  strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
  ☆25Updated 2 weeks ago
• perpdgo / lme4GS
  lme4 for Genomic Selection
  ☆17Updated 3 years ago
• matthewwolak / nadiv
  R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…
  ☆21Updated 7 months ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆64Updated 2 years ago
• Biometris / statgenGxE
  See https://biometris.github.io/statgenGxE for a full description
  ☆10Updated last week
• PaulSchmidtGit / Heritability
  Heritability in plant breeding - R and SAS code examples
  ☆33Updated 4 years ago
• Tom-Jenkins / mapmixture
  R package and web app for spatial visualisation of admixture on a projected map
  ☆44Updated 2 weeks ago
• gaynorr / AlphaSimR
  R package for breeding program simulations
  ☆48Updated last week
• QuantGen / MTM
  Multivariate Gaussian Models for Genomic and Pedigree Data
  ☆12Updated 4 years ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated this week
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆65Updated last week
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 4 years ago
• thierrygosselin / stackr
  stackr: an R package to run stacks software pipeline
  ☆29Updated 2 weeks ago
• thibautjombart / adegenet
  adegenet: a R package for the multivariate analysis of genetic markers
  ☆184Updated 2 months ago
• NESCent / popgenInfo
  Vignettes for Population Genetics in R
  ☆25Updated 4 years ago
• helixcn / EcoEvoLinks
  Links for Ecology and Evolution
  ☆22Updated 5 years ago
• cheuerde / cpgen
  Parallel Genomic evaluations in R
  ☆17Updated 6 months ago