Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
☆49Sep 24, 2026Updated this week
Alternatives and similar repositories for SeqArray
Users that are interested in SeqArray are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)☆20Updated this week
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 9 years ago
- extract SV signal from a BAM☆10Jul 26, 2018Updated 8 years ago
- Linear-time, low-memory construction of variation graphs☆20Aug 28, 2026Updated 3 weeks ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Jun 30, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- C++ wrapper to tabix indexer☆18Jun 27, 2025Updated last year
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Handle Strings as Vectors of Characters☆27Nov 7, 2024Updated last year
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆116Jun 17, 2026Updated 3 months ago
- ParaFly - parallel cmd processing utility☆15Aug 10, 2021Updated 5 years ago
- Ultra Fast NGS Data QC Tool☆28Feb 14, 2021Updated 5 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- TOPMed analysis pipeline☆52Oct 10, 2023Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆39Jul 4, 2021Updated 5 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆30Sep 3, 2026Updated 3 weeks ago
- Tutorials for the crisprVerse☆16Feb 10, 2025Updated last year
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated 2 weeks ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 4 months ago
- Pipeline in place at the UGI for DNA level analysis☆12Aug 29, 2016Updated 10 years ago
- Structure for Interfaces (from "Extending R")☆28Jul 26, 2018Updated 8 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- Class materials for Yale Biostats BIS557☆13Dec 4, 2019Updated 6 years ago
- A repo comparing syntax in R and Python for various tasks. Not comprehensive, but a subset of lines to get one started☆12Dec 3, 2018Updated 7 years ago
- Oh, dip!☆21Dec 13, 2018Updated 7 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆105Jul 14, 2026Updated 2 months ago
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Feb 3, 2020Updated 6 years ago
- Query the gene models of a given organism/assembly☆26Aug 27, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Oct 1, 2019Updated 6 years ago
- Visualize Rprof Results as a Tree☆15Nov 10, 2021Updated 4 years ago
- Repository for resources we'd like to share with the community.☆27Apr 1, 2022Updated 4 years ago
- In-place modification of vectors☆37May 15, 2026Updated 4 months ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆46Sep 13, 2026Updated last week
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago