stjude-rust-labs / wdl
Rust crates for working with Workflow Description Language (WDL) documents.
☆26Updated this week
Related projects ⓘ
Alternatives and complementary repositories for wdl
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆31Updated last week
- bedtools-like functionality for interval sets in rust☆44Updated 3 months ago
- A high-performance BigWig and BigBed library in Rust☆71Updated last week
- Fast interval intersection library☆22Updated this week
- Alignment-based gene expression quantification☆26Updated 5 months ago
- Rust wrapper of the BWA C API☆18Updated 3 years ago
- Convert vcf in parquet☆22Updated 4 months ago
- Command line utility for working with next-generation sequencing files.☆34Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- Fast sequencing data quality metrics☆17Updated this week
- Rust bindings to minimap2 library☆67Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 3 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- ☆57Updated 2 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆94Updated 5 months ago
- Read specialized NGS formats as data frames in R, Python, and more.☆62Updated 4 months ago
- Single-cell analysis methods in Rust☆15Updated 5 months ago
- A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.☆20Updated last week
- Quality of life improvements for Bioinformatics in Python.☆27Updated last week
- ☆47Updated 2 years ago
- bioinformatics toolkit in rust☆78Updated 6 months ago
- Fasten toolkit, for streaming operations on fastq files☆76Updated 9 months ago
- FASTA and FASTQ parsing in Rust☆72Updated 11 months ago
- Generate random test data for bioinformatics☆25Updated 5 months ago
- sfasta☆34Updated 3 months ago
- an API for intersections of genomic data☆74Updated this week
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- Rust UMI Directional Adjacency Deduplicator☆14Updated 4 years ago