Alternatives and similar repositories for wdl

Users that are interested in wdl are comparing it to the libraries listed below

• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆74Updated this week
• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
  ☆38Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆90Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆99Updated last month
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆77Updated 2 months ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• stjude-rust-labs / omics
  Foundations for the Rust omics ecosystem.
  ☆10Updated 5 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 9 months ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆51Updated 2 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆89Updated this week
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 11 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆37Updated last week
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last month
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆33Updated last month
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆87Updated 3 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 9 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• abdenlab / oxbow
  Oxbow makes genomic data accessible for high-performance analytics.
  ☆79Updated this week
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• natir / vcf2parquet
  Convert vcf in parquet
  ☆26Updated 4 months ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆132Updated 3 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆129Updated 4 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆22Updated 6 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last week
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆44Updated last month