stjude-rust-labs / wdlLinks
Rust crates for working with Workflow Description Language (WDL) documents.
☆62Updated 3 months ago
Alternatives and similar repositories for wdl
Users that are interested in wdl are comparing it to the libraries listed below
Sorting:
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆108Updated this week
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆45Updated last week
- A high efficiency binary format for sequencing data☆84Updated last week
- Foundations for the Rust omics ecosystem.☆12Updated 2 months ago
- A crate for working with the Task Execution Service (TES) specification.☆13Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆110Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆80Updated 9 months ago
- ☆50Updated 3 years ago
- Bit-packed and well-typed biological sequences☆37Updated last month
- ☆57Updated 3 years ago
- Efficient querying of biological databases☆42Updated 2 months ago
- Alignment-based gene expression quantification☆30Updated 4 months ago
- Rust bindings to minimap2 library☆102Updated 2 weeks ago
- A library of common biomedical types.☆40Updated 8 months ago
- Convert vcf in parquet☆27Updated 11 months ago
- A server implementation of the htsget protocol for bioinformatics in Rust☆49Updated this week
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- A Rust library for parsing, writing and manipulating Genbank sequence files☆21Updated 8 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated last year
- Rust utility code☆32Updated last year
- bioinformatics toolkit in rust☆93Updated 3 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated last week
- A quality control tool for FASTQ files written in rust☆52Updated 6 months ago
- Fast interval intersection library☆44Updated 4 months ago
- The D4 Quantitative Data Format☆169Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆38Updated 2 weeks ago