Rust crates for working with Workflow Description Language (WDL) documents.
☆62Sep 23, 2025Updated last year
Alternatives and similar repositories for wdl
Users that are interested in wdl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A crate for working with the Task Execution Service (TES) specification.☆13Oct 1, 2026Updated 3 weeks ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆221Updated this week
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆61Oct 6, 2026Updated 2 weeks ago
- A performant Kubernetes-based task executor for the Task Execution Service (TES) 1.1 specification.☆18Oct 7, 2026Updated 2 weeks ago
- Foundations for the Rust omics ecosystem.☆35Jul 23, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A crate for working with genomics chain files.☆15Jul 20, 2026Updated 3 months ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆45Updated this week
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 6 months ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 10 months ago
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago
- Bioinformatics I/O libraries in Rust☆730Oct 15, 2026Updated last week
- Command line utility for manipulating FASTQ files☆105Sep 22, 2026Updated last month
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Sep 7, 2026Updated last month
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.☆26Oct 1, 2026Updated 3 weeks ago
- Alignment-based gene expression quantification☆40Oct 1, 2026Updated 3 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆45Sep 30, 2026Updated 3 weeks ago
- Automatic Input Documentation for WDL workflows☆12Sep 5, 2024Updated 2 years ago
- Python library for simple and complex indels.☆13Jan 22, 2024Updated 2 years ago
- ☆14Oct 14, 2020Updated 6 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- MetaCall Multi-Language AST Cross-Language Dependency Graph Static Analyzer.☆20Oct 4, 2026Updated 2 weeks ago
- ☆11Sep 4, 2026Updated last month
- Workflow Description Language developer tools & local runner☆207Updated this week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- A server implementation of the htsget protocol for bioinformatics in Rust☆59Aug 3, 2026Updated 2 months ago
- ☆19Aug 25, 2026Updated last month
- Fasten toolkit, for streaming operations on fastq files☆85Oct 12, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- A very fast interval tree data structure☆137Feb 3, 2025Updated last year
- PCA in rust☆16Jul 30, 2023Updated 3 years ago
- WDL and CWL compiler for the DNAnexus platform☆37Oct 14, 2026Updated last week
- Production-grade Rust microservice framework with enforced best practices, dual HTTP+gRPC support, and comprehensive observability☆27Oct 7, 2026Updated 2 weeks ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago