Alternatives and similar repositories for wdl

Users that are interested in wdl are comparing it to the libraries listed below

• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆77Updated last week
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆63Updated 2 weeks ago
• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
  ☆39Updated last month
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆39Updated 3 weeks ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆98Updated last month
• kcleal / superintervals
  Fast interval intersection library
  ☆41Updated this week
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated 2 weeks ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆45Updated 2 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 4 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 10 months ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated 3 weeks ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 3 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated last month
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated 3 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆34Updated 2 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 5 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆108Updated 3 weeks ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆37Updated 3 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆87Updated 4 months ago
• stjude-rust-labs / omics
  Foundations for the Rust omics ecosystem.
  ☆11Updated 2 weeks ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆49Updated last month
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 7 months ago
• rust-bio / hts-sys
  Raw rust bindings for htslib
  ☆9Updated 3 months ago
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆20Updated 2 months ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆51Updated last month