Alternatives and similar repositories for wdl

Users that are interested in wdl are comparing it to the libraries listed below

• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆91Updated this week
• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
  ☆42Updated last week
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆101Updated 4 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 3 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 2 weeks ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆75Updated this week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆53Updated 2 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated this week
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆45Updated last week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆39Updated 5 months ago
• stjude-rust-labs / omics
  Foundations for the Rust omics ecosystem.
  ☆11Updated 3 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 8 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆100Updated last month
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆22Updated 2 weeks ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 3 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 5 months ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆167Updated 5 months ago
• ostnam / rust-wfa
  ☆11Updated 3 years ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆91Updated last month
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 4 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆91Updated last week