Alternatives and similar repositories for wdl:

Users that are interested in wdl are comparing it to the libraries listed below

• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆68Updated last week
• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
  ☆38Updated last week
• stjude-rust-labs / omics
  Foundations for the Rust omics ecosystem.
  ☆10Updated 3 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆51Updated 8 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆88Updated last week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆76Updated last month
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated 2 weeks ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated 11 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆81Updated 2 weeks ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆36Updated last week
• brentp / vcf-bench
  evaluating vcf parsing libraries
  ☆19Updated 3 years ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆28Updated this week
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 4 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆26Updated 2 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆83Updated this week
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 3 years ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 10 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆85Updated last month
• kcleal / superintervals
  Fast interval intersection library
  ☆37Updated last month
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆35Updated 2 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• varfish-org / hgvs-rs
  A port of biocommons/hgvs to the Rust programming language
  ☆13Updated 3 weeks ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆32Updated 2 months ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 2 weeks ago