Rust crates for working with Workflow Description Language (WDL) documents.
☆62Sep 23, 2025Updated 9 months ago
Alternatives and similar repositories for wdl
Users that are interested in wdl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆179Updated this week
- A crate for working with the Task Execution Service (TES) specification.☆13Jan 8, 2026Updated 6 months ago
- A crate for working with genomics chain files.☆15Mar 19, 2026Updated 3 months ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆55Jun 25, 2026Updated 2 weeks ago
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆44Jul 1, 2026Updated last week
- Foundations for the Rust omics ecosystem.☆17Mar 19, 2026Updated 3 months ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 7 months ago
- Alignment-based gene expression quantification☆38Feb 8, 2026Updated 5 months ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Command line utility for manipulating FASTQ files☆98Apr 14, 2026Updated 2 months ago
- Bioinformatics I/O libraries in Rust☆711Jul 2, 2026Updated last week
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆43Nov 28, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Updated this week
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- Workflow Description Language developer tools & local runner☆202Jun 29, 2026Updated last week
- ☆14Oct 14, 2020Updated 5 years ago
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆28Jun 19, 2026Updated 2 weeks ago
- A very fast interval tree data structure☆133Feb 3, 2025Updated last year
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- WDL and CWL compiler for the DNAnexus platform☆37Jun 22, 2026Updated 2 weeks ago
- implicit pangenome graph☆109Jun 17, 2026Updated 3 weeks ago
- A high-performance BigWig and BigBed library in Rust☆117Updated this week
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- WDL plugin for pytest☆49Aug 1, 2023Updated 2 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- An R wrapper to the overly complicated Bitmoji API 😱☆24May 31, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read and Write RDS files, in Python☆28Updated this week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- Modular job submitter for arbitrary pipelines or commands.☆26Apr 11, 2026Updated 2 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 5 months ago