Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
☆58Jan 28, 2023Updated 3 years ago
Alternatives and similar repositories for gccontent-benchmark
Users that are interested in gccontent-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆145Jan 19, 2026Updated 4 months ago
- A very fast interval tree data structure☆132Feb 3, 2025Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast FASTX parsing and k-mer methods in Rust☆211Apr 20, 2026Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆184Dec 9, 2021Updated 4 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 3 weeks ago
- ☆14May 12, 2023Updated 3 years ago
- ☆22Jul 28, 2022Updated 3 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54May 18, 2026Updated 3 weeks ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 3 months ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- Banded Striped DNA Sequence Alignment☆53May 9, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Mar 19, 2026Updated 2 months ago
- Alignment-based gene expression quantification☆38Feb 8, 2026Updated 4 months ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated 11 months ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 6 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆21Dec 26, 2025Updated 5 months ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago