sjroth / ARTDecoLinks
☆20Updated last year
Alternatives and similar repositories for ARTDeco
Users that are interested in ARTDeco are comparing it to the libraries listed below
Sorting:
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- A list of alternative splicing analysis resources☆45Updated 4 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 3 weeks ago
- Tutorial Website☆59Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 3 weeks ago
- polyApipe☆18Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 8 months ago
- ☆58Updated 3 weeks ago
- Quantification of transposable element expression using RNA-seq☆73Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- An R interface to the MEME Suite☆52Updated last month
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 6 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆53Updated 3 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 8 months ago
- RiboPlotR package for Ribo-plot☆15Updated last month
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago