sjroth / ARTDecoLinks
☆22Updated last year
Alternatives and similar repositories for ARTDeco
Users that are interested in ARTDeco are comparing it to the libraries listed below
Sorting:
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 10 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 5 months ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Tutorial Website☆61Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- ☆60Updated 5 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 7 years ago
- ☆62Updated 5 years ago
- ☆15Updated 3 years ago
- polyApipe☆19Updated 10 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆78Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week