sanderlab / tumorcomparerLinks
A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.
☆12Updated 3 years ago
Alternatives and similar repositories for tumorcomparer
Users that are interested in tumorcomparer are comparing it to the libraries listed below
Sorting:
- XEnograft Visualization & Analysis☆11Updated 3 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆28Updated last year
- Tools for assessing clustering robustness☆31Updated 2 weeks ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆15Updated 2 years ago
- Single cell proteomics data processing☆30Updated 3 months ago
- scRNAseq integration with triplet neural networks☆41Updated last week
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 4 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Updated 9 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Updated 3 months ago
- An R package for visualising cell-cell interactions☆46Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 4 months ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Updated 4 months ago
- Client to access ExperimentHub resources☆11Updated 3 months ago
- Model-based tumour subclonal deconvolution using population genetics☆34Updated 2 months ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆24Updated 2 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- ☆27Updated 8 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- ☆38Updated 4 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- CiteFuse:☆28Updated 3 years ago