sanderlab / tumorcomparer
A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for tumorcomparer
- XEnograft Visualization & Analysis☆9Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆24Updated last year
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated this week
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆10Updated 2 weeks ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 5 months ago
- Tools for assessing clustering robustness☆22Updated last week
- ☆33Updated 4 months ago
- ☆17Updated 6 months ago
- A Tidy Framework to Hack Gene Expression Signatures☆19Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆20Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- ☆11Updated 9 months ago
- ☆26Updated last year
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 6 months ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Updated 2 weeks ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Mean Alterations Using Discrete Expression☆13Updated 7 months ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 4 years ago