A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.
☆12Jan 31, 2023Updated 3 years ago
Alternatives and similar repositories for tumorcomparer
Users that are interested in tumorcomparer are comparing it to the libraries listed below
Sorting:
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Python library for SBGN☆11Feb 9, 2026Updated 3 weeks ago
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- Processed E-MTAB-3610 dataset - Transcriptional Profiling of 1,000 human cancer cell lines☆11Dec 23, 2021Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 5 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Aug 11, 2020Updated 5 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆19Jan 8, 2024Updated 2 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Feb 15, 2026Updated 2 weeks ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- ☆25Aug 24, 2023Updated 2 years ago
- EBI cancer workshop course materials☆22May 9, 2022Updated 3 years ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Mar 2, 2020Updated 6 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Feb 4, 2026Updated last month
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated last month
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated 2 weeks ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆21May 6, 2025Updated 10 months ago
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆11Sep 30, 2024Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Aug 22, 2021Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated 10 months ago
- Epimap processing and analysis code repository☆34Aug 22, 2022Updated 3 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Jun 14, 2022Updated 3 years ago