Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData representation.
☆12Oct 23, 2019Updated 6 years ago
Alternatives and similar repositories for ms-data-core-api
Users that are interested in ms-data-core-api are comparing it to the libraries listed below
Sorting:
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- Repository for mzML and the corresponding examples☆34Apr 5, 2024Updated last year
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- Open source Java library for computational proteomics☆34Feb 25, 2026Updated 3 weeks ago
- Computational analysis for mass spectrometry-based proteomics data☆11Apr 25, 2016Updated 9 years ago
- OnLine Spectral Search ENgine for Proteomics big data using Apache Spark, Python/Flask, and AngularJS☆15Sep 14, 2015Updated 10 years ago
- Repository for mzIdentML and the corresponding examples☆26Jan 16, 2026Updated 2 months ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Mar 11, 2024Updated 2 years ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/mstoolkit☆30Dec 1, 2025Updated 3 months ago
- Single cell proteomics data processing☆30Feb 9, 2026Updated last month
- Mass spectrometry data visualization☆38Nov 30, 2020Updated 5 years ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23May 22, 2025Updated 9 months ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Mar 11, 2026Updated last week
- Reporting and exchange format for mass spectrometry quality control data☆32Dec 12, 2025Updated 3 months ago
- Open source Java framework to create, process and manage mixtures of exponential family☆14Aug 4, 2015Updated 10 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 4 months ago
- Java 8 and Spark learning through examples☆43Nov 10, 2017Updated 8 years ago
- Convert ThermoFinningan RAW mass spectrometry files to the mzXML format☆17Nov 8, 2023Updated 2 years ago
- Galaxy Tool Shed repositories maintained and developed by the GalaxyP community☆36Feb 2, 2026Updated last month
- PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics☆16Aug 11, 2022Updated 3 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144Nov 21, 2025Updated 3 months ago
- Docker for Bioinformatics☆20Mar 2, 2026Updated 2 weeks ago
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆17Sep 7, 2023Updated 2 years ago
- C# Mass Spectrometry Library☆40Jun 14, 2022Updated 3 years ago
- i2dash: interactive and iterative dashboards.☆10Sep 5, 2023Updated 2 years ago
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 7 years ago
- Komodo QT wallet☆10Oct 17, 2022Updated 3 years ago
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 5 months ago
- Plotting mass spectra with Matplotlib☆35Nov 11, 2016Updated 9 years ago
- Booking managment through a rich graphical interface.☆12Dec 7, 2021Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Mar 13, 2026Updated last week
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 7 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated last year
- MHC Class I and Class II neoantigen binding prediction☆35Jul 23, 2025Updated 7 months ago
- Computational analysis for mass spectrometry-based proteomics data☆20Feb 22, 2026Updated 3 weeks ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆108Updated this week
- An open-source C++ multiplex HMM library for making inferences on multiple data types☆14Sep 30, 2017Updated 8 years ago
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year